miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 150685 0.68 0.877851
Target:  5'- cCGCuGCUGCuggguGCUGCUGCGcCGG-CggCg -3'
miRNA:   3'- -GCG-UGACGu----CGACGACGU-GCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 137298 0.69 0.832039
Target:  5'- aGCuGCggguggcGCGGCUGCUGCGCGG-Cg-- -3'
miRNA:   3'- gCG-UGa------CGUCGACGACGUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 103074 0.69 0.832039
Target:  5'- uGCGCggGCgagGGCUGCUGCugGGg---- -3'
miRNA:   3'- gCGUGa-CG---UCGACGACGugCCagaag -5'
14628 3' -56.4 NC_003521.1 + 235990 0.68 0.840153
Target:  5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3'
miRNA:   3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 180921 0.68 0.855826
Target:  5'- uGUACUGCGGCcGCUcgauggugGCGCGGUg--- -3'
miRNA:   3'- gCGUGACGUCGaCGA--------CGUGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 142295 0.68 0.855826
Target:  5'- cCGcCGCUGCAGCggcccaGCcGCGCGcGUCgUCg -3'
miRNA:   3'- -GC-GUGACGUCGa-----CGaCGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 183767 0.68 0.863371
Target:  5'- uCGcCGCUGCuaCUGCUGCgACGGUCc-- -3'
miRNA:   3'- -GC-GUGACGucGACGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 13264 0.68 0.877851
Target:  5'- uCGCugUGUAGCUGUaugGUgggugACGGcgUCUUCa -3'
miRNA:   3'- -GCGugACGUCGACGa--CG-----UGCC--AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 30238 0.68 0.877851
Target:  5'- uCGCGCUGCAGgU-CcGCGCGGUUg-- -3'
miRNA:   3'- -GCGUGACGUCgAcGaCGUGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 122686 0.69 0.823749
Target:  5'- aGCACcGaCAGCUGCgggGC-CGGUCg-- -3'
miRNA:   3'- gCGUGaC-GUCGACGa--CGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 160772 0.69 0.81529
Target:  5'- uCGCGCgugccgccgGCGGCacGCggGCGCGgGUCUUCg -3'
miRNA:   3'- -GCGUGa--------CGUCGa-CGa-CGUGC-CAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 12256 0.69 0.81529
Target:  5'- -uCGCUGCcgAGCUGCaguccggugaacUGCACGGUCg-- -3'
miRNA:   3'- gcGUGACG--UCGACG------------ACGUGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 70664 0.77 0.380843
Target:  5'- gGUGCUGCAGCUGCUGCugGaaaaccgacggcGUCUg- -3'
miRNA:   3'- gCGUGACGUCGACGACGugC------------CAGAag -5'
14628 3' -56.4 NC_003521.1 + 28852 0.77 0.405736
Target:  5'- aCGaGCUGCGGCgGCgcgGCACGGUCgagUCg -3'
miRNA:   3'- -GCgUGACGUCGaCGa--CGUGCCAGa--AG- -5'
14628 3' -56.4 NC_003521.1 + 168624 0.73 0.583356
Target:  5'- gCGCcauCUGCuguuGCUGCUGCgccACGGUCaUCg -3'
miRNA:   3'- -GCGu--GACGu---CGACGACG---UGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 223843 0.72 0.663749
Target:  5'- uGCuguccCUGCGGCUGCUGCuGCGG-CUg- -3'
miRNA:   3'- gCGu----GACGUCGACGACG-UGCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 114952 0.7 0.742507
Target:  5'- uCGCGCagcgGCGGCUGCUGCGgcGUCagUCg -3'
miRNA:   3'- -GCGUGa---CGUCGACGACGUgcCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 56498 0.7 0.761437
Target:  5'- aGUACUGCGGCUGacgGCcGCGGUagcgUUUCa -3'
miRNA:   3'- gCGUGACGUCGACga-CG-UGCCA----GAAG- -5'
14628 3' -56.4 NC_003521.1 + 153986 0.7 0.761437
Target:  5'- cCGUAgaGCAGCUGCUugcgcagcacGCACGGg--UCg -3'
miRNA:   3'- -GCGUgaCGUCGACGA----------CGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 49152 0.69 0.80667
Target:  5'- uGCGauugucGCGGCUGCUGCugGGgCUg- -3'
miRNA:   3'- gCGUga----CGUCGACGACGugCCaGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.