miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 54968 0.67 0.914934
Target:  5'- gCGCACggaugacagaucGCAGCUGCUGgAUGGcCg-- -3'
miRNA:   3'- -GCGUGa-----------CGUCGACGACgUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 153201 0.67 0.91262
Target:  5'- gGC-CUGCGGCggcaccUGCUGCcacaccugcuacaacACGGcCUUCg -3'
miRNA:   3'- gCGuGACGUCG------ACGACG---------------UGCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 42651 0.67 0.91027
Target:  5'- cCGCGgUGUAGgcguacguCUGCUGCACGGg---- -3'
miRNA:   3'- -GCGUgACGUC--------GACGACGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 60773 0.67 0.91027
Target:  5'- gCGaCAgUGCGGCaUGCUGCggcuuuccgACGGUCccgUCu -3'
miRNA:   3'- -GC-GUgACGUCG-ACGACG---------UGCCAGa--AG- -5'
14628 3' -56.4 NC_003521.1 + 101141 0.67 0.91027
Target:  5'- gGCAC-GCGGaaaGCgcgGCGCGGUCUg- -3'
miRNA:   3'- gCGUGaCGUCga-CGa--CGUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 21343 0.67 0.904233
Target:  5'- cCGUGCUGCucAGCgcGCUGCuAUGGUCg-- -3'
miRNA:   3'- -GCGUGACG--UCGa-CGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 140847 0.67 0.904233
Target:  5'- aCGUGCUGgAGC-GCUuCGCGGUCUc- -3'
miRNA:   3'- -GCGUGACgUCGaCGAcGUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 17586 0.67 0.904233
Target:  5'- gCGCAC-GCucucGCUGCUGCAgGGgcUCUa- -3'
miRNA:   3'- -GCGUGaCGu---CGACGACGUgCC--AGAag -5'
14628 3' -56.4 NC_003521.1 + 48011 0.67 0.904233
Target:  5'- gGCuuCUGCGGCUGCUGCcaGCGaUCc-- -3'
miRNA:   3'- gCGu-GACGUCGACGACG--UGCcAGaag -5'
14628 3' -56.4 NC_003521.1 + 136046 0.67 0.901755
Target:  5'- aCGCACcugugcgaccuggGCAGCgGCUGCGCGcUCaUCu -3'
miRNA:   3'- -GCGUGa------------CGUCGaCGACGUGCcAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 19660 0.67 0.89797
Target:  5'- uGC-CUGgGGCUGCUGCGCuGGg---- -3'
miRNA:   3'- gCGuGACgUCGACGACGUG-CCagaag -5'
14628 3' -56.4 NC_003521.1 + 76283 0.67 0.89797
Target:  5'- aGuCGCUGCcGCUGCUGCGaguccgGGUCc-- -3'
miRNA:   3'- gC-GUGACGuCGACGACGUg-----CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 103007 0.67 0.891483
Target:  5'- aGCGCcuuaauaaUGCAGCUGCgcucguccGCcCGGUCUa- -3'
miRNA:   3'- gCGUG--------ACGUCGACGa-------CGuGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 179600 0.67 0.891483
Target:  5'- uGCagGCUGCcgcuGCUGCUGCGCGugauGUCg-- -3'
miRNA:   3'- gCG--UGACGu---CGACGACGUGC----CAGaag -5'
14628 3' -56.4 NC_003521.1 + 6147 0.68 0.877851
Target:  5'- aCGUACUGCAGCcaaugcgccggcUccggcuccugGCUGUugGGUCcgUCg -3'
miRNA:   3'- -GCGUGACGUCG------------A----------CGACGugCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 183546 0.68 0.877851
Target:  5'- gCGCACcGac-CUGCUGCugGGUCg-- -3'
miRNA:   3'- -GCGUGaCgucGACGACGugCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 150685 0.68 0.877851
Target:  5'- cCGCuGCUGCuggguGCUGCUGCGcCGG-CggCg -3'
miRNA:   3'- -GCG-UGACGu----CGACGACGU-GCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 214636 0.68 0.877851
Target:  5'- uGUGCUGCAGCgagcgGCUGCGCuucGUUggCa -3'
miRNA:   3'- gCGUGACGUCGa----CGACGUGc--CAGaaG- -5'
14628 3' -56.4 NC_003521.1 + 13264 0.68 0.877851
Target:  5'- uCGCugUGUAGCUGUaugGUgggugACGGcgUCUUCa -3'
miRNA:   3'- -GCGugACGUCGACGa--CG-----UGCC--AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 30238 0.68 0.877851
Target:  5'- uCGCGCUGCAGgU-CcGCGCGGUUg-- -3'
miRNA:   3'- -GCGUGACGUCgAcGaCGUGCCAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.