miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 226228 1.06 0.005708
Target:  5'- cAUAAUCACCGUGCCGUAGCCCGGCGUg -3'
miRNA:   3'- -UAUUAGUGGCACGGCAUCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 130180 0.84 0.147673
Target:  5'- --cGUgACCGUGCCGgcGCCCGGCGa -3'
miRNA:   3'- uauUAgUGGCACGGCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 30937 0.77 0.392252
Target:  5'- -cAGUCGCCGUGCCGUagguagugccaAGCCaGGCGc -3'
miRNA:   3'- uaUUAGUGGCACGGCA-----------UCGGgCCGCa -5'
14628 5' -57 NC_003521.1 + 117691 0.76 0.434566
Target:  5'- -gAcgCGCCGcUGCCGUacuucguacagcGGCCCGGCGa -3'
miRNA:   3'- uaUuaGUGGC-ACGGCA------------UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 18073 0.75 0.49797
Target:  5'- ----aCGCCGUGgCCGUAGCCCagacGGCGc -3'
miRNA:   3'- uauuaGUGGCAC-GGCAUCGGG----CCGCa -5'
14628 5' -57 NC_003521.1 + 44244 0.74 0.516849
Target:  5'- ----cCGCCGUGCgCGggAGUCCGGCGUc -3'
miRNA:   3'- uauuaGUGGCACG-GCa-UCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 208932 0.74 0.555408
Target:  5'- -cAGUUcCUGUGCCGcGGCCUGGCGg -3'
miRNA:   3'- uaUUAGuGGCACGGCaUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 209529 0.73 0.575009
Target:  5'- --cGUCGCCGcUGCCGcgguuaugcGCCCGGCGg -3'
miRNA:   3'- uauUAGUGGC-ACGGCau-------CGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 39436 0.73 0.575009
Target:  5'- -----uGCCGcUGCCGgccgAGCCCGGCGc -3'
miRNA:   3'- uauuagUGGC-ACGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 23087 0.73 0.594763
Target:  5'- --uGUCugCGU-CCGUGGCCgGGCGg -3'
miRNA:   3'- uauUAGugGCAcGGCAUCGGgCCGCa -5'
14628 5' -57 NC_003521.1 + 192810 0.73 0.594763
Target:  5'- -gGAUCGCUGgcagcaGCCGcagaAGCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCa-----CGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 176061 0.72 0.628554
Target:  5'- -gGAUCGCCcgGUGCCGcgccggccggcgucuUGGCCaCGGCGUc -3'
miRNA:   3'- uaUUAGUGG--CACGGC---------------AUCGG-GCCGCA- -5'
14628 5' -57 NC_003521.1 + 61771 0.72 0.634528
Target:  5'- --cGUCACCGggaccGCCGccGGCuCCGGCGUg -3'
miRNA:   3'- uauUAGUGGCa----CGGCa-UCG-GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 129622 0.72 0.634528
Target:  5'- -gAGUCGCCG-GCC---GCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCaCGGcauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 136758 0.72 0.644483
Target:  5'- uAUAGUCACCaacGUGCUGgcGCagaCGGCGUc -3'
miRNA:   3'- -UAUUAGUGG---CACGGCauCGg--GCCGCA- -5'
14628 5' -57 NC_003521.1 + 193661 0.72 0.654428
Target:  5'- -aGAUCAUCGUGCuCGUcggcaAGCgCGGCGg -3'
miRNA:   3'- uaUUAGUGGCACG-GCA-----UCGgGCCGCa -5'
14628 5' -57 NC_003521.1 + 212850 0.71 0.674261
Target:  5'- ----cCGCCGUgGCCGUGagcgccGCCUGGCGUu -3'
miRNA:   3'- uauuaGUGGCA-CGGCAU------CGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 26009 0.71 0.693963
Target:  5'- ----cCGCCGUcGCCGc-GCCCGGCGc -3'
miRNA:   3'- uauuaGUGGCA-CGGCauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 152806 0.71 0.713469
Target:  5'- -cGGUCACCGgcagGUgGUacAGCUCGGCGUc -3'
miRNA:   3'- uaUUAGUGGCa---CGgCA--UCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 39292 0.71 0.713469
Target:  5'- --cGUCGCCGgcGCCGUAGCggaaccauucgUCGGCGUc -3'
miRNA:   3'- uauUAGUGGCa-CGGCAUCG-----------GGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.