miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 5' -57 NC_003521.1 + 217717 0.68 0.85446
Target:  5'- ----aCACUGUGCCGU--CCCGGCc- -3'
miRNA:   3'- uauuaGUGGCACGGCAucGGGCCGca -5'
14628 5' -57 NC_003521.1 + 239520 0.69 0.814252
Target:  5'- ---cUCGCCGgcGCCGUAGCggaaccauucgUCGGCGUc -3'
miRNA:   3'- uauuAGUGGCa-CGGCAUCG-----------GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 42785 0.69 0.822635
Target:  5'- ----gCACC-UGcCCGUgcAGCCCGGCGg -3'
miRNA:   3'- uauuaGUGGcAC-GGCA--UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 33668 0.68 0.838903
Target:  5'- -gGAUCcagcgACCG-GCCGUGGCCCGcaCGUa -3'
miRNA:   3'- uaUUAG-----UGGCaCGGCAUCGGGCc-GCA- -5'
14628 5' -57 NC_003521.1 + 54522 0.68 0.838903
Target:  5'- -gGAUCugCacggcGCCGcuggGGCCCGGCGg -3'
miRNA:   3'- uaUUAGugGca---CGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 165772 0.68 0.838903
Target:  5'- --cAUCAUCGUGCCGaaggccAGCCCgcuGGCGc -3'
miRNA:   3'- uauUAGUGGCACGGCa-----UCGGG---CCGCa -5'
14628 5' -57 NC_003521.1 + 138676 0.68 0.838903
Target:  5'- gGUGAgccUCACCGgcgacaagGCCGUgAGCCUgGGCGg -3'
miRNA:   3'- -UAUU---AGUGGCa-------CGGCA-UCGGG-CCGCa -5'
14628 5' -57 NC_003521.1 + 54494 0.68 0.85446
Target:  5'- uUGAUgGCCG-GC---GGCCCGGCGUg -3'
miRNA:   3'- uAUUAgUGGCaCGgcaUCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 148082 0.68 0.85446
Target:  5'- cUGGUUcaggACCGUGCUcUGGuCCCGGCGc -3'
miRNA:   3'- uAUUAG----UGGCACGGcAUC-GGGCCGCa -5'
14628 5' -57 NC_003521.1 + 32903 0.69 0.814252
Target:  5'- ----cCGCCGUGCCcgccgccCCCGGCGUa -3'
miRNA:   3'- uauuaGUGGCACGGcauc---GGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 36759 0.69 0.797023
Target:  5'- ---cUCGCUGUccaaggacGCgCGUGGCCUGGCGg -3'
miRNA:   3'- uauuAGUGGCA--------CG-GCAUCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 180940 0.7 0.760939
Target:  5'- gGUGG-CGCgGUGCCGUAGUCC-GCGg -3'
miRNA:   3'- -UAUUaGUGgCACGGCAUCGGGcCGCa -5'
14628 5' -57 NC_003521.1 + 30937 0.77 0.392252
Target:  5'- -cAGUCGCCGUGCCGUagguagugccaAGCCaGGCGc -3'
miRNA:   3'- uaUUAGUGGCACGGCA-----------UCGGgCCGCa -5'
14628 5' -57 NC_003521.1 + 44244 0.74 0.516849
Target:  5'- ----cCGCCGUGCgCGggAGUCCGGCGUc -3'
miRNA:   3'- uauuaGUGGCACG-GCa-UCGGGCCGCA- -5'
14628 5' -57 NC_003521.1 + 39436 0.73 0.575009
Target:  5'- -----uGCCGcUGCCGgccgAGCCCGGCGc -3'
miRNA:   3'- uauuagUGGC-ACGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 209529 0.73 0.575009
Target:  5'- --cGUCGCCGcUGCCGcgguuaugcGCCCGGCGg -3'
miRNA:   3'- uauUAGUGGC-ACGGCau-------CGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 192810 0.73 0.594763
Target:  5'- -gGAUCGCUGgcagcaGCCGcagaAGCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCa-----CGGCa---UCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 129622 0.72 0.634528
Target:  5'- -gAGUCGCCG-GCC---GCCCGGCGg -3'
miRNA:   3'- uaUUAGUGGCaCGGcauCGGGCCGCa -5'
14628 5' -57 NC_003521.1 + 61771 0.72 0.634528
Target:  5'- --cGUCACCGggaccGCCGccGGCuCCGGCGUg -3'
miRNA:   3'- uauUAGUGGCa----CGGCa-UCG-GGCCGCA- -5'
14628 5' -57 NC_003521.1 + 152806 0.71 0.713469
Target:  5'- -cGGUCACCGgcagGUgGUacAGCUCGGCGUc -3'
miRNA:   3'- uaUUAGUGGCa---CGgCA--UCGGGCCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.