miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 58 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 4573 0.69 0.832561
Target:  5'- cGGGGcacacGCCGGCCUccGGUuugcuaaCGGGCCGCg -3'
miRNA:   3'- -CUCU-----UGGCCGGA--UCGcaa----GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 6460 0.67 0.934522
Target:  5'- cGAGAaacACCGGCacgaccagggcaUGGCGUg-GGAUCGUg -3'
miRNA:   3'- -CUCU---UGGCCGg-----------AUCGCAagCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 13176 0.66 0.956389
Target:  5'- --aGGCgGGuCCUgaccaGGCGUgccgcUCGGGCCGCc -3'
miRNA:   3'- cucUUGgCC-GGA-----UCGCA-----AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 13729 0.69 0.84821
Target:  5'- uGGGAACC-GCUcAGUGgcUCGGACCGUc -3'
miRNA:   3'- -CUCUUGGcCGGaUCGCa-AGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 14751 0.71 0.772869
Target:  5'- -cGGGCCGGCC--GCGgcCGGGgCGCg -3'
miRNA:   3'- cuCUUGGCCGGauCGCaaGCCUgGCG- -5'
14629 3' -56.7 NC_003521.1 + 17758 0.69 0.855765
Target:  5'- gGGGAACUGGCCguaccgccGGCGg-CGGACgGUc -3'
miRNA:   3'- -CUCUUGGCCGGa-------UCGCaaGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 18728 0.67 0.914804
Target:  5'- cGAGAcgcuGCCGGCgCU-GCaGggCGGGCUGUg -3'
miRNA:   3'- -CUCU----UGGCCG-GAuCG-CaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 19958 0.68 0.890641
Target:  5'- uGAGGugGCCGGgCUGGCGgugaUCGuGACCu- -3'
miRNA:   3'- -CUCU--UGGCCgGAUCGCa---AGC-CUGGcg -5'
14629 3' -56.7 NC_003521.1 + 20206 0.66 0.946184
Target:  5'- cGGGAACucgCGcGCUUGuguauaagaguuagcGCGUUCGGACgGCu -3'
miRNA:   3'- -CUCUUG---GC-CGGAU---------------CGCAAGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 20639 0.7 0.81624
Target:  5'- gGAGAGCCGcGCgCUGGUGggCGccuacgugauGACCGUg -3'
miRNA:   3'- -CUCUUGGC-CG-GAUCGCaaGC----------CUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 20921 0.67 0.925579
Target:  5'- cGGGGACCGGUCUcaaucgcacGCGggUCGGAgCGa -3'
miRNA:   3'- -CUCUUGGCCGGAu--------CGCa-AGCCUgGCg -5'
14629 3' -56.7 NC_003521.1 + 23485 0.67 0.925579
Target:  5'- cGAGGACCGGCCgc-CGUcCGccACCGUg -3'
miRNA:   3'- -CUCUUGGCCGGaucGCAaGCc-UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 28304 0.66 0.947435
Target:  5'- cGAGAGcagcggcagcgaccCCGGCgcGGCcugCGGACCGCc -3'
miRNA:   3'- -CUCUU--------------GGCCGgaUCGcaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 30216 0.73 0.658901
Target:  5'- cGAGAucgGCCGGCCguUGGCG-UCGcGCUGCa -3'
miRNA:   3'- -CUCU---UGGCCGG--AUCGCaAGCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 31075 0.71 0.763816
Target:  5'- uGAGAACCGGCCaacAGCGacgacggCGGcgGCCGg -3'
miRNA:   3'- -CUCUUGGCCGGa--UCGCaa-----GCC--UGGCg -5'
14629 3' -56.7 NC_003521.1 + 36353 0.67 0.930636
Target:  5'- aGGGGCuCGGgCUGGCGUggcgCGGcuUCGCg -3'
miRNA:   3'- cUCUUG-GCCgGAUCGCAa---GCCu-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 36500 0.7 0.81624
Target:  5'- aGGggUCGaCCaUGGCG-UCGGACUGCg -3'
miRNA:   3'- cUCuuGGCcGG-AUCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 36588 0.73 0.629431
Target:  5'- -cGAACUGGCCUGGCGg-CGGgugGCCGa -3'
miRNA:   3'- cuCUUGGCCGGAUCGCaaGCC---UGGCg -5'
14629 3' -56.7 NC_003521.1 + 36769 0.67 0.935472
Target:  5'- aAGGACgcgcgUGGCCUGGCGggcguggaGGACgCGCc -3'
miRNA:   3'- cUCUUG-----GCCGGAUCGCaag-----CCUG-GCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.