Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14629 | 3' | -56.7 | NC_003521.1 | + | 58 | 0.73 | 0.628448 |
Target: 5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3' miRNA: 3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 4573 | 0.69 | 0.832561 |
Target: 5'- cGGGGcacacGCCGGCCUccGGUuugcuaaCGGGCCGCg -3' miRNA: 3'- -CUCU-----UGGCCGGA--UCGcaa----GCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 6460 | 0.67 | 0.934522 |
Target: 5'- cGAGAaacACCGGCacgaccagggcaUGGCGUg-GGAUCGUg -3' miRNA: 3'- -CUCU---UGGCCGg-----------AUCGCAagCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 13176 | 0.66 | 0.956389 |
Target: 5'- --aGGCgGGuCCUgaccaGGCGUgccgcUCGGGCCGCc -3' miRNA: 3'- cucUUGgCC-GGA-----UCGCA-----AGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 13729 | 0.69 | 0.84821 |
Target: 5'- uGGGAACC-GCUcAGUGgcUCGGACCGUc -3' miRNA: 3'- -CUCUUGGcCGGaUCGCa-AGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 14751 | 0.71 | 0.772869 |
Target: 5'- -cGGGCCGGCC--GCGgcCGGGgCGCg -3' miRNA: 3'- cuCUUGGCCGGauCGCaaGCCUgGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 17758 | 0.69 | 0.855765 |
Target: 5'- gGGGAACUGGCCguaccgccGGCGg-CGGACgGUc -3' miRNA: 3'- -CUCUUGGCCGGa-------UCGCaaGCCUGgCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 18728 | 0.67 | 0.914804 |
Target: 5'- cGAGAcgcuGCCGGCgCU-GCaGggCGGGCUGUg -3' miRNA: 3'- -CUCU----UGGCCG-GAuCG-CaaGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 19958 | 0.68 | 0.890641 |
Target: 5'- uGAGGugGCCGGgCUGGCGgugaUCGuGACCu- -3' miRNA: 3'- -CUCU--UGGCCgGAUCGCa---AGC-CUGGcg -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 20206 | 0.66 | 0.946184 |
Target: 5'- cGGGAACucgCGcGCUUGuguauaagaguuagcGCGUUCGGACgGCu -3' miRNA: 3'- -CUCUUG---GC-CGGAU---------------CGCAAGCCUGgCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 20639 | 0.7 | 0.81624 |
Target: 5'- gGAGAGCCGcGCgCUGGUGggCGccuacgugauGACCGUg -3' miRNA: 3'- -CUCUUGGC-CG-GAUCGCaaGC----------CUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 20921 | 0.67 | 0.925579 |
Target: 5'- cGGGGACCGGUCUcaaucgcacGCGggUCGGAgCGa -3' miRNA: 3'- -CUCUUGGCCGGAu--------CGCa-AGCCUgGCg -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 23485 | 0.67 | 0.925579 |
Target: 5'- cGAGGACCGGCCgc-CGUcCGccACCGUg -3' miRNA: 3'- -CUCUUGGCCGGaucGCAaGCc-UGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 28304 | 0.66 | 0.947435 |
Target: 5'- cGAGAGcagcggcagcgaccCCGGCgcGGCcugCGGACCGCc -3' miRNA: 3'- -CUCUU--------------GGCCGgaUCGcaaGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 30216 | 0.73 | 0.658901 |
Target: 5'- cGAGAucgGCCGGCCguUGGCG-UCGcGCUGCa -3' miRNA: 3'- -CUCU---UGGCCGG--AUCGCaAGCcUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 31075 | 0.71 | 0.763816 |
Target: 5'- uGAGAACCGGCCaacAGCGacgacggCGGcgGCCGg -3' miRNA: 3'- -CUCUUGGCCGGa--UCGCaa-----GCC--UGGCg -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 36353 | 0.67 | 0.930636 |
Target: 5'- aGGGGCuCGGgCUGGCGUggcgCGGcuUCGCg -3' miRNA: 3'- cUCUUG-GCCgGAUCGCAa---GCCu-GGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 36500 | 0.7 | 0.81624 |
Target: 5'- aGGggUCGaCCaUGGCG-UCGGACUGCg -3' miRNA: 3'- cUCuuGGCcGG-AUCGCaAGCCUGGCG- -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 36588 | 0.73 | 0.629431 |
Target: 5'- -cGAACUGGCCUGGCGg-CGGgugGCCGa -3' miRNA: 3'- cuCUUGGCCGGAUCGCaaGCC---UGGCg -5' |
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14629 | 3' | -56.7 | NC_003521.1 | + | 36769 | 0.67 | 0.935472 |
Target: 5'- aAGGACgcgcgUGGCCUGGCGggcguggaGGACgCGCc -3' miRNA: 3'- cUCUUG-----GCCGGAUCGCaag-----CCUG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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