miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 3' -56.7 NC_003521.1 + 17758 0.69 0.855765
Target:  5'- gGGGAACUGGCCguaccgccGGCGg-CGGACgGUc -3'
miRNA:   3'- -CUCUUGGCCGGa-------UCGCaaGCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 167474 0.71 0.772869
Target:  5'- aGAGGGaaGGCCUGaCGgucgUCGGGCCGg -3'
miRNA:   3'- -CUCUUggCCGGAUcGCa---AGCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 138909 0.7 0.781807
Target:  5'- cGAGuacGCCGGCUcGGUG-UCGGACCa- -3'
miRNA:   3'- -CUCu--UGGCCGGaUCGCaAGCCUGGcg -5'
14629 3' -56.7 NC_003521.1 + 56897 0.7 0.807845
Target:  5'- cGAGAGCUGGCCgucGCGacaGcGCCGCa -3'
miRNA:   3'- -CUCUUGGCCGGau-CGCaagCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 222700 0.69 0.830154
Target:  5'- -cGGugCGGCCgGGCGUgCGGaucaccagguugagGCCGCu -3'
miRNA:   3'- cuCUugGCCGGaUCGCAaGCC--------------UGGCG- -5'
14629 3' -56.7 NC_003521.1 + 4573 0.69 0.832561
Target:  5'- cGGGGcacacGCCGGCCUccGGUuugcuaaCGGGCCGCg -3'
miRNA:   3'- -CUCU-----UGGCCGGA--UCGcaa----GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 150884 0.69 0.832561
Target:  5'- cGAGGugCGGCCgcacgccGGCGUcaUCG-ACUGCg -3'
miRNA:   3'- -CUCUugGCCGGa------UCGCA--AGCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 137865 0.69 0.840473
Target:  5'- cAGAGCCccgacGCCcgAGCGccUGGACCGCg -3'
miRNA:   3'- cUCUUGGc----CGGa-UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 63535 0.69 0.840473
Target:  5'- -cGAGCCcugGGCCcAGCGUcaCGGAgCCGCc -3'
miRNA:   3'- cuCUUGG---CCGGaUCGCAa-GCCU-GGCG- -5'
14629 3' -56.7 NC_003521.1 + 239838 0.71 0.763816
Target:  5'- --cGGCCGGCCcAGCGggagCaGACCGCc -3'
miRNA:   3'- cucUUGGCCGGaUCGCaa--GcCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 31075 0.71 0.763816
Target:  5'- uGAGAACCGGCCaacAGCGacgacggCGGcgGCCGg -3'
miRNA:   3'- -CUCUUGGCCGGa--UCGCaa-----GCC--UGGCg -5'
14629 3' -56.7 NC_003521.1 + 164256 0.71 0.736041
Target:  5'- cAGAAUCGuGCCggaGGCG--CGGACCGCc -3'
miRNA:   3'- cUCUUGGC-CGGa--UCGCaaGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 186622 0.77 0.432417
Target:  5'- cGGAcACCGGCCagcAGCGgUCGGGCUGCu -3'
miRNA:   3'- cUCU-UGGCCGGa--UCGCaAGCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 68514 0.75 0.551406
Target:  5'- --cGACCGGCCUGGCGccaccgacacCGGACgGCg -3'
miRNA:   3'- cucUUGGCCGGAUCGCaa--------GCCUGgCG- -5'
14629 3' -56.7 NC_003521.1 + 213032 0.74 0.597041
Target:  5'- -cGAGCCGGCCgAGCGggcCGGAguagguuucuuccuCCGCg -3'
miRNA:   3'- cuCUUGGCCGGaUCGCaa-GCCU--------------GGCG- -5'
14629 3' -56.7 NC_003521.1 + 111566 0.73 0.619603
Target:  5'- cGAGGugCGGCUgagccGGCGgguucCGGACUGCg -3'
miRNA:   3'- -CUCUugGCCGGa----UCGCaa---GCCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 200286 0.73 0.628448
Target:  5'- cGGAACCGGUUUccgcggcGGCGUgcggCGGGCCGg -3'
miRNA:   3'- cUCUUGGCCGGA-------UCGCAa---GCCUGGCg -5'
14629 3' -56.7 NC_003521.1 + 39428 0.73 0.629431
Target:  5'- cGAGAaaaugccgcuGCCGGCCgagcccGGCGccgaGGGCCGCg -3'
miRNA:   3'- -CUCU----------UGGCCGGa-----UCGCaag-CCUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 30216 0.73 0.658901
Target:  5'- cGAGAucgGCCGGCCguUGGCG-UCGcGCUGCa -3'
miRNA:   3'- -CUCU---UGGCCGG--AUCGCaAGCcUGGCG- -5'
14629 3' -56.7 NC_003521.1 + 142642 0.73 0.668694
Target:  5'- gGAGAACCgcGGCCUcAGCGgUCGGcgcagcGCCGUc -3'
miRNA:   3'- -CUCUUGG--CCGGA-UCGCaAGCC------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.