Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14629 | 5' | -49.4 | NC_003521.1 | + | 27848 | 0.67 | 0.993664 |
Target: 5'- aGGg-CGAGCCGCUGGGCa--- -3' miRNA: 3'- -CCagGCUCGGUGACUCGccaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 39120 | 0.71 | 0.944012 |
Target: 5'- cGUCCGGGCguCUGcAGCGGg- -3' miRNA: 3'- cCAGGCUCGguGAC-UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 47178 | 0.68 | 0.98728 |
Target: 5'- cGUCCGGGUCGCUGuacgacGUGGUc -3' miRNA: 3'- cCAGGCUCGGUGACu-----CGCCAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 57180 | 0.69 | 0.9768 |
Target: 5'- aGGUCCGAGCCGuguugguaGAGCuGGUg -3' miRNA: 3'- -CCAGGCUCGGUga------CUCG-CCAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 58766 | 0.72 | 0.910463 |
Target: 5'- aGGUCC-AGCCACUGcagGGCGGc- -3' miRNA: 3'- -CCAGGcUCGGUGAC---UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 59274 | 0.81 | 0.480658 |
Target: 5'- aGGUCCGA-CUACUGAGCGGUc -3' miRNA: 3'- -CCAGGCUcGGUGACUCGCCAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 66991 | 0.7 | 0.968046 |
Target: 5'- aGUCUGAGCCAgaguCUGAGgGGg- -3' miRNA: 3'- cCAGGCUCGGU----GACUCgCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 82473 | 0.71 | 0.953047 |
Target: 5'- cGUCCG-GCCGCaGGGUGGUg -3' miRNA: 3'- cCAGGCuCGGUGaCUCGCCAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 87807 | 0.67 | 0.992655 |
Target: 5'- cGGcCUGGGCCAg-GAGCGGa- -3' miRNA: 3'- -CCaGGCUCGGUgaCUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 88143 | 0.75 | 0.796837 |
Target: 5'- --aCCGAGCCGCUgGAGCGGc- -3' miRNA: 3'- ccaGGCUCGGUGA-CUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 91569 | 0.69 | 0.981562 |
Target: 5'- aGGUCCGc-CCACaagGGGCGGUg -3' miRNA: 3'- -CCAGGCucGGUGa--CUCGCCAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 95765 | 0.69 | 0.9768 |
Target: 5'- cGUCCGAGCCGCccAGaCGGUc -3' miRNA: 3'- cCAGGCUCGGUGacUC-GCCAa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 98531 | 0.72 | 0.916731 |
Target: 5'- cGG-CUGGGCCGCUGcAGCGGc- -3' miRNA: 3'- -CCaGGCUCGGUGAC-UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 107782 | 0.67 | 0.994559 |
Target: 5'- --gCUGAGCCACUGuGGUGGg- -3' miRNA: 3'- ccaGGCUCGGUGAC-UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 113392 | 0.66 | 0.996649 |
Target: 5'- uGGccgaCGAGCCGCUG-GCGGc- -3' miRNA: 3'- -CCag--GCUCGGUGACuCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 113901 | 0.69 | 0.979282 |
Target: 5'- aGGUaggCGAGCUGCUGAGCGa-- -3' miRNA: 3'- -CCAg--GCUCGGUGACUCGCcaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 121004 | 0.67 | 0.993374 |
Target: 5'- aGUCgGAGCCGCUGcuccagaccuccucGGCGGc- -3' miRNA: 3'- cCAGgCUCGGUGAC--------------UCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 125327 | 0.71 | 0.939096 |
Target: 5'- gGGUCCG-GCCACaGAGCGa-- -3' miRNA: 3'- -CCAGGCuCGGUGaCUCGCcaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 127829 | 0.69 | 0.984431 |
Target: 5'- aGGUgcCCGGgugguaguggcgcccGCCGCUGAGCGGc- -3' miRNA: 3'- -CCA--GGCU---------------CGGUGACUCGCCaa -5' |
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14629 | 5' | -49.4 | NC_003521.1 | + | 128391 | 0.7 | 0.957173 |
Target: 5'- cGcCUGGGCCGcCUGAGCGGg- -3' miRNA: 3'- cCaGGCUCGGU-GACUCGCCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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