miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14629 5' -49.4 NC_003521.1 + 227094 1.02 0.032326
Target:  5'- cGGUCCGAGCCACUGAGCGGUUc -3'
miRNA:   3'- -CCAGGCUCGGUGACUCGCCAA- -5'
14629 5' -49.4 NC_003521.1 + 155441 0.66 0.997634
Target:  5'- uGG-CCGAcCCGCUGGGCGaGUc -3'
miRNA:   3'- -CCaGGCUcGGUGACUCGC-CAa -5'
14629 5' -49.4 NC_003521.1 + 209522 0.66 0.997177
Target:  5'- cGGUgaCCGucGCCGCUGccGCGGUUa -3'
miRNA:   3'- -CCA--GGCu-CGGUGACu-CGCCAA- -5'
14629 5' -49.4 NC_003521.1 + 129230 0.66 0.996649
Target:  5'- aGUCCGGcGCCGCUGGccacgcGCGGc- -3'
miRNA:   3'- cCAGGCU-CGGUGACU------CGCCaa -5'
14629 5' -49.4 NC_003521.1 + 177990 0.67 0.995349
Target:  5'- --gCCGGGUCAgaGAGCGGg- -3'
miRNA:   3'- ccaGGCUCGGUgaCUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 121004 0.67 0.993374
Target:  5'- aGUCgGAGCCGCUGcuccagaccuccucGGCGGc- -3'
miRNA:   3'- cCAGgCUCGGUGAC--------------UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 196391 0.68 0.985552
Target:  5'- --gCCGAGCCGCcgucacgaUGGGCGGg- -3'
miRNA:   3'- ccaGGCUCGGUG--------ACUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 91569 0.69 0.981562
Target:  5'- aGGUCCGc-CCACaagGGGCGGUg -3'
miRNA:   3'- -CCAGGCucGGUGa--CUCGCCAa -5'
14629 5' -49.4 NC_003521.1 + 82473 0.71 0.953047
Target:  5'- cGUCCG-GCCGCaGGGUGGUg -3'
miRNA:   3'- cCAGGCuCGGUGaCUCGCCAa -5'
14629 5' -49.4 NC_003521.1 + 239348 0.71 0.944012
Target:  5'- cGUCCGGGCguCUGcAGCGGg- -3'
miRNA:   3'- cCAGGCUCGguGAC-UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 125327 0.71 0.939096
Target:  5'- gGGUCCG-GCCACaGAGCGa-- -3'
miRNA:   3'- -CCAGGCuCGGUGaCUCGCcaa -5'
14629 5' -49.4 NC_003521.1 + 58766 0.72 0.910463
Target:  5'- aGGUCC-AGCCACUGcagGGCGGc- -3'
miRNA:   3'- -CCAGGcUCGGUGAC---UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 57180 0.69 0.9768
Target:  5'- aGGUCCGAGCCGuguugguaGAGCuGGUg -3'
miRNA:   3'- -CCAGGCUCGGUga------CUCG-CCAa -5'
14629 5' -49.4 NC_003521.1 + 66991 0.7 0.968046
Target:  5'- aGUCUGAGCCAgaguCUGAGgGGg- -3'
miRNA:   3'- cCAGGCUCGGU----GACUCgCCaa -5'
14629 5' -49.4 NC_003521.1 + 128391 0.7 0.957173
Target:  5'- cGcCUGGGCCGcCUGAGCGGg- -3'
miRNA:   3'- cCaGGCUCGGU-GACUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 39120 0.71 0.944012
Target:  5'- cGUCCGGGCguCUGcAGCGGg- -3'
miRNA:   3'- cCAGGCUCGguGAC-UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 98531 0.72 0.916731
Target:  5'- cGG-CUGGGCCGCUGcAGCGGc- -3'
miRNA:   3'- -CCaGGCUCGGUGAC-UCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 173650 0.72 0.910463
Target:  5'- uGGUUCGGGCgGCUGcGCGGg- -3'
miRNA:   3'- -CCAGGCUCGgUGACuCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 88143 0.75 0.796837
Target:  5'- --aCCGAGCCGCUgGAGCGGc- -3'
miRNA:   3'- ccaGGCUCGGUGA-CUCGCCaa -5'
14629 5' -49.4 NC_003521.1 + 141082 0.66 0.997634
Target:  5'- --gCCGGGCCAaaUGAGCGGc- -3'
miRNA:   3'- ccaGGCUCGGUg-ACUCGCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.