Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 66991 | 0.7 | 0.968046 |
|
Target: 5'- aGUCUGAGCCAgaguCUGAGgGGg- -3' miRNA: 3'- cCAGGCUCGGU----GACUCgCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 128391 | 0.7 | 0.957173 |
|
Target: 5'- cGcCUGGGCCGcCUGAGCGGg- -3' miRNA: 3'- cCaGGCUCGGU-GACUCGCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 82473 | 0.71 | 0.953047 |
|
Target: 5'- cGUCCG-GCCGCaGGGUGGUg -3' miRNA: 3'- cCAGGCuCGGUGaCUCGCCAa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 39120 | 0.71 | 0.944012 |
|
Target: 5'- cGUCCGGGCguCUGcAGCGGg- -3' miRNA: 3'- cCAGGCUCGguGAC-UCGCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 239348 | 0.71 | 0.944012 |
|
Target: 5'- cGUCCGGGCguCUGcAGCGGg- -3' miRNA: 3'- cCAGGCUCGguGAC-UCGCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 125327 | 0.71 | 0.939096 |
|
Target: 5'- gGGUCCG-GCCACaGAGCGa-- -3' miRNA: 3'- -CCAGGCuCGGUGaCUCGCcaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 98531 | 0.72 | 0.916731 |
|
Target: 5'- cGG-CUGGGCCGCUGcAGCGGc- -3' miRNA: 3'- -CCaGGCUCGGUGAC-UCGCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 173650 | 0.72 | 0.910463 |
|
Target: 5'- uGGUUCGGGCgGCUGcGCGGg- -3' miRNA: 3'- -CCAGGCUCGgUGACuCGCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 58766 | 0.72 | 0.910463 |
|
Target: 5'- aGGUCC-AGCCACUGcagGGCGGc- -3' miRNA: 3'- -CCAGGcUCGGUGAC---UCGCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 88143 | 0.75 | 0.796837 |
|
Target: 5'- --aCCGAGCCGCUgGAGCGGc- -3' miRNA: 3'- ccaGGCUCGGUGA-CUCGCCaa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 59274 | 0.81 | 0.480658 |
|
Target: 5'- aGGUCCGA-CUACUGAGCGGUc -3' miRNA: 3'- -CCAGGCUcGGUGACUCGCCAa -5' |
|||||||
| 14629 | 5' | -49.4 | NC_003521.1 | + | 227094 | 1.02 | 0.032326 |
|
Target: 5'- cGGUCCGAGCCACUGAGCGGUUc -3' miRNA: 3'- -CCAGGCUCGGUGACUCGCCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home