Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 7236 | 0.68 | 0.596675 |
Target: 5'- cGCGUCGauGGAGGGUaACCGCCcGAcguUCGu -3' miRNA: 3'- -UGCAGU--UCUUCCGgUGGCGGuCU---AGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 5688 | 0.69 | 0.530831 |
Target: 5'- gGCGUCGAGcAGGuGCuCGCgGCCAGG-CAg -3' miRNA: 3'- -UGCAGUUC-UUC-CG-GUGgCGGUCUaGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 35043 | 0.69 | 0.509439 |
Target: 5'- gGCGUCGgcAGA--GUCGCCGCCAGAg-- -3' miRNA: 3'- -UGCAGU--UCUucCGGUGGCGGUCUagu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 20361 | 0.7 | 0.446667 |
Target: 5'- cACGUCGuguucgaAGAAGGaCCGCUGaCCGGgAUCAa -3' miRNA: 3'- -UGCAGU-------UCUUCC-GGUGGC-GGUC-UAGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 13070 | 1.08 | 0.00114 |
Target: 5'- aACGUCAAGAAGGCCACCGCCAGAUCAc -3' miRNA: 3'- -UGCAGUUCUUCCGGUGGCGGUCUAGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 33828 | 0.66 | 0.685777 |
Target: 5'- gGCGUCAcGAa---CGCCGCCAGGUUg -3' miRNA: 3'- -UGCAGUuCUuccgGUGGCGGUCUAGu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 10248 | 0.68 | 0.574511 |
Target: 5'- cUGUCAAGAAcgauccGGCC-CCGC-AGAUCGu -3' miRNA: 3'- uGCAGUUCUU------CCGGuGGCGgUCUAGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 328 | 0.66 | 0.728333 |
Target: 5'- -gGUCAuAGAGaucuauucgauccGGCaACCGCCGGAUCu -3' miRNA: 3'- ugCAGU-UCUU-------------CCGgUGGCGGUCUAGu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 7314 | 0.66 | 0.696793 |
Target: 5'- -gGUCAAuGAAGGCCACgCGauggCAGAggUCAu -3' miRNA: 3'- ugCAGUU-CUUCCGGUG-GCg---GUCU--AGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 17427 | 0.66 | 0.674709 |
Target: 5'- aACGUCAucaAGAAGGUguCCGaguGGGUCAg -3' miRNA: 3'- -UGCAGU---UCUUCCGguGGCgg-UCUAGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 8354 | 0.67 | 0.618963 |
Target: 5'- cAUGagCAAGAAGGCCcguaGCgGCCGGGUg- -3' miRNA: 3'- -UGCa-GUUCUUCCGG----UGgCGGUCUAgu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 11269 | 0.67 | 0.652458 |
Target: 5'- --cUCGAGGccaucaAGGCCGCUGUCGGgAUCAa -3' miRNA: 3'- ugcAGUUCU------UCCGGUGGCGGUC-UAGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 32593 | 0.66 | 0.71862 |
Target: 5'- gGCG-CGAGAcugcugcuGGCCACCGCCGc---- -3' miRNA: 3'- -UGCaGUUCUu-------CCGGUGGCGGUcuagu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 16379 | 0.66 | 0.696793 |
Target: 5'- aGCGUCGGGGcagcgucgAGGCgGCUGCCuuGAUg- -3' miRNA: 3'- -UGCAGUUCU--------UCCGgUGGCGGu-CUAgu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 16643 | 0.67 | 0.641298 |
Target: 5'- aGCGUCAGGAAcGCCugCguGCCGGuagCGa -3' miRNA: 3'- -UGCAGUUCUUcCGGugG--CGGUCua-GU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 13182 | 0.72 | 0.372235 |
Target: 5'- gUGUCGAGGAGGCucaucagagCACCGCCGaccguGAUCu -3' miRNA: 3'- uGCAGUUCUUCCG---------GUGGCGGU-----CUAGu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 17006 | 0.7 | 0.488416 |
Target: 5'- aGCGUCuGGAAGGCCGgCGUgAGcgCc -3' miRNA: 3'- -UGCAGuUCUUCCGGUgGCGgUCuaGu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 6042 | 0.69 | 0.498878 |
Target: 5'- cACaUCGGGAAcGCCGCUGCCGGGUa- -3' miRNA: 3'- -UGcAGUUCUUcCGGUGGCGGUCUAgu -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 40676 | 0.69 | 0.508378 |
Target: 5'- aACGUCAGcAAGGCCGCUGacaacuuCgAGAUCAa -3' miRNA: 3'- -UGCAGUUcUUCCGGUGGC-------GgUCUAGU- -5' |
|||||||
1463 | 3' | -54.8 | NC_001335.1 | + | 12206 | 0.68 | 0.596675 |
Target: 5'- cACGUCGaaGGAcAGGCCGCCGaccuggccCCAGAc-- -3' miRNA: 3'- -UGCAGU--UCU-UCCGGUGGC--------GGUCUagu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home