miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1463 5' -54.8 NC_001335.1 + 1696 0.66 0.727711
Target:  5'- cGGcGCUCcGAc-AGCCggCCUCGGCAUg -3'
miRNA:   3'- -CCaCGAGaCUacUCGGa-GGAGCUGUG- -5'
1463 5' -54.8 NC_001335.1 + 47539 0.66 0.716949
Target:  5'- aGUGgaacCUC-GGUGAGCCgUCCUCGugAa -3'
miRNA:   3'- cCAC----GAGaCUACUCGG-AGGAGCugUg -5'
1463 5' -54.8 NC_001335.1 + 24416 0.66 0.679784
Target:  5'- aGGUGCgacgaccaaggagCUGAUG-GCCcgUCUCGGuCACa -3'
miRNA:   3'- -CCACGa------------GACUACuCGGa-GGAGCU-GUG- -5'
1463 5' -54.8 NC_001335.1 + 52144 0.67 0.662082
Target:  5'- -aUGCgacGAUgcgaGAGCCggCCUCGACACa -3'
miRNA:   3'- ccACGagaCUA----CUCGGa-GGAGCUGUG- -5'
1463 5' -54.8 NC_001335.1 + 44445 0.67 0.662082
Target:  5'- aGG-GCUCgaugGAUGGGUCgaaCUCGAgCACu -3'
miRNA:   3'- -CCaCGAGa---CUACUCGGag-GAGCU-GUG- -5'
1463 5' -54.8 NC_001335.1 + 40454 0.67 0.62984
Target:  5'- aGUGCUUcuugaucccguccuUGGUcuugcaggucacgucGAGCUUCUUCGACGCg -3'
miRNA:   3'- cCACGAG--------------ACUA---------------CUCGGAGGAGCUGUG- -5'
1463 5' -54.8 NC_001335.1 + 28531 0.68 0.559076
Target:  5'- cGUGCcCUGAUgGAGCCgaggaaguucacggUCCUCGGgACc -3'
miRNA:   3'- cCACGaGACUA-CUCGG--------------AGGAGCUgUG- -5'
1463 5' -54.8 NC_001335.1 + 28927 0.72 0.380825
Target:  5'- cGG-GCUCUGAUucGCCUCCaCGAgGCc -3'
miRNA:   3'- -CCaCGAGACUAcuCGGAGGaGCUgUG- -5'
1463 5' -54.8 NC_001335.1 + 17654 0.73 0.305878
Target:  5'- uGGUGCagUGAaGGGCUUCCUgGGCAUc -3'
miRNA:   3'- -CCACGagACUaCUCGGAGGAgCUGUG- -5'
1463 5' -54.8 NC_001335.1 + 13104 1.11 0.000696
Target:  5'- cGGUGCUCUGAUGAGCCUCCUCGACACc -3'
miRNA:   3'- -CCACGAGACUACUCGGAGGAGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.