miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 3' -59.6 NC_003521.1 + 1 0.67 0.80467
Target:  5'- -CCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3'
miRNA:   3'- aGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 3057 0.66 0.837339
Target:  5'- aCCGC--CCCCGAAuucucCGAUCCCGGGAa -3'
miRNA:   3'- aGGUGccGGGGCUUc----GCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 4535 0.68 0.74232
Target:  5'- aCCGCaucGCCCCGAGGCGuugcUCUgAGGAu -3'
miRNA:   3'- aGGUGc--CGGGGCUUCGCu---AGGgUCUU- -5'
14630 3' -59.6 NC_003521.1 + 14445 0.66 0.859349
Target:  5'- -aCACGGCCCUGcGGCGGcgucagccgccgcUCCCGc-- -3'
miRNA:   3'- agGUGCCGGGGCuUCGCU-------------AGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 29939 0.69 0.656222
Target:  5'- -gCACGGCCaCCGAGGCGAcguacaCCCuGGg -3'
miRNA:   3'- agGUGCCGG-GGCUUCGCUa-----GGGuCUu -5'
14630 3' -59.6 NC_003521.1 + 30091 0.66 0.860081
Target:  5'- gCCACGGCCUa----CGAUUCCGGGAc -3'
miRNA:   3'- aGGUGCCGGGgcuucGCUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 40321 0.69 0.675673
Target:  5'- cUCCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3'
miRNA:   3'- -AGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 40496 0.67 0.813069
Target:  5'- gCCACGGCgCCGcAGCGcAUCUC-GAAc -3'
miRNA:   3'- aGGUGCCGgGGCuUCGC-UAGGGuCUU- -5'
14630 3' -59.6 NC_003521.1 + 42815 0.7 0.626931
Target:  5'- gCCACGGuCCCCGAacgcaacuguGGCGuaugcuacCCCGGGAa -3'
miRNA:   3'- aGGUGCC-GGGGCU----------UCGCua------GGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 46243 0.66 0.859349
Target:  5'- gUCgCACGGCCUCGAcgucgcccucgguGGCGGUagCgCAGAGg -3'
miRNA:   3'- -AG-GUGCCGGGGCU-------------UCGCUA--GgGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 59615 0.67 0.786578
Target:  5'- gCgGCGGCCCCGGcGGCGAccgcggcUCgCAGGc -3'
miRNA:   3'- aGgUGCCGGGGCU-UCGCU-------AGgGUCUu -5'
14630 3' -59.6 NC_003521.1 + 63856 0.67 0.799562
Target:  5'- gUCCAaGGCCCUGAcacgguggacgaggcGGCGcgCCgGGAGc -3'
miRNA:   3'- -AGGUgCCGGGGCU---------------UCGCuaGGgUCUU- -5'
14630 3' -59.6 NC_003521.1 + 64092 0.72 0.50249
Target:  5'- gCC-CGGCCUgGAGGCGGgcUUCCAGAAc -3'
miRNA:   3'- aGGuGCCGGGgCUUCGCU--AGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 64769 0.68 0.732998
Target:  5'- -gCGCGGCaCCG-GGCGAUCCCAa-- -3'
miRNA:   3'- agGUGCCGgGGCuUCGCUAGGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 74186 0.69 0.694994
Target:  5'- gCCGCGGCgCCCGgcGCGcggCCCGa-- -3'
miRNA:   3'- aGGUGCCG-GGGCuuCGCua-GGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 80512 0.67 0.787453
Target:  5'- cCCACGGCUCCGAuGGCcGUgCCCAc-- -3'
miRNA:   3'- aGGUGCCGGGGCU-UCGcUA-GGGUcuu -5'
14630 3' -59.6 NC_003521.1 + 84042 0.68 0.723596
Target:  5'- gUCCACGGCCaCCuucucGAGCGAgaggCCCuGGc -3'
miRNA:   3'- -AGGUGCCGG-GGc----UUCGCUa---GGGuCUu -5'
14630 3' -59.6 NC_003521.1 + 89474 0.68 0.757962
Target:  5'- aUCGCGGUCCgCaGAGCGGgaagagcaggacggUCCCAGAAa -3'
miRNA:   3'- aGGUGCCGGG-GcUUCGCU--------------AGGGUCUU- -5'
14630 3' -59.6 NC_003521.1 + 92042 0.66 0.851178
Target:  5'- gCCGCGGCuCCuCGgcGCGAccgccgagggcaCCCAGAu -3'
miRNA:   3'- aGGUGCCG-GG-GCuuCGCUa-----------GGGUCUu -5'
14630 3' -59.6 NC_003521.1 + 101262 0.67 0.813069
Target:  5'- --aGCGGCUCCaGAGGCuggCCCAGAGc -3'
miRNA:   3'- aggUGCCGGGG-CUUCGcuaGGGUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.