Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 3' | -59.6 | NC_003521.1 | + | 63856 | 0.67 | 0.799562 |
Target: 5'- gUCCAaGGCCCUGAcacgguggacgaggcGGCGcgCCgGGAGc -3' miRNA: 3'- -AGGUgCCGGGGCU---------------UCGCuaGGgUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 74186 | 0.69 | 0.694994 |
Target: 5'- gCCGCGGCgCCCGgcGCGcggCCCGa-- -3' miRNA: 3'- aGGUGCCG-GGGCuuCGCua-GGGUcuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 64769 | 0.68 | 0.732998 |
Target: 5'- -gCGCGGCaCCG-GGCGAUCCCAa-- -3' miRNA: 3'- agGUGCCGgGGCuUCGCUAGGGUcuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 210962 | 0.68 | 0.751554 |
Target: 5'- gCCACGGCCUUcu-GCG-UCCCGGGc -3' miRNA: 3'- aGGUGCCGGGGcuuCGCuAGGGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 116809 | 0.68 | 0.751554 |
Target: 5'- gCCGCGaCCCCGAcugggugcugcAGCGGuUUCCAGAc -3' miRNA: 3'- aGGUGCcGGGGCU-----------UCGCU-AGGGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 89474 | 0.68 | 0.757962 |
Target: 5'- aUCGCGGUCCgCaGAGCGGgaagagcaggacggUCCCAGAAa -3' miRNA: 3'- aGGUGCCGGG-GcUUCGCU--------------AGGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 122152 | 0.67 | 0.769727 |
Target: 5'- -gCACGuGCCCCGAGaUGGggCCCAGGAc -3' miRNA: 3'- agGUGC-CGGGGCUUcGCUa-GGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 59615 | 0.67 | 0.786578 |
Target: 5'- gCgGCGGCCCCGGcGGCGAccgcggcUCgCAGGc -3' miRNA: 3'- aGgUGCCGGGGCU-UCGCU-------AGgGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 80512 | 0.67 | 0.787453 |
Target: 5'- cCCACGGCUCCGAuGGCcGUgCCCAc-- -3' miRNA: 3'- aGGUGCCGGGGCU-UCGcUA-GGGUcuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 186478 | 0.69 | 0.694994 |
Target: 5'- gCCAC-GCCCCG-AGUGG-CCCAGGg -3' miRNA: 3'- aGGUGcCGGGGCuUCGCUaGGGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 163962 | 0.69 | 0.685353 |
Target: 5'- gCCGCGGaCgCCGAagauGGCGGUCgCCGGGc -3' miRNA: 3'- aGGUGCC-GgGGCU----UCGCUAG-GGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 240548 | 0.69 | 0.675673 |
Target: 5'- cUCCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3' miRNA: 3'- -AGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 233432 | 0.75 | 0.366483 |
Target: 5'- cUCCgACGGCCUCGAcGCGGUCCCu--- -3' miRNA: 3'- -AGG-UGCCGGGGCUuCGCUAGGGucuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 64092 | 0.72 | 0.50249 |
Target: 5'- gCC-CGGCCUgGAGGCGGgcUUCCAGAAc -3' miRNA: 3'- aGGuGCCGGGgCUUCGCU--AGGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 147506 | 0.71 | 0.559009 |
Target: 5'- -aCACGGCCCCGAAGCa---CCAGc- -3' miRNA: 3'- agGUGCCGGGGCUUCGcuagGGUCuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 112450 | 0.71 | 0.587956 |
Target: 5'- cCCagGCGGCCCUGGugGGCGcgCCCGGc- -3' miRNA: 3'- aGG--UGCCGGGGCU--UCGCuaGGGUCuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 144124 | 0.7 | 0.60741 |
Target: 5'- gCCGCGGCCUggaCGAGGUGcgCCUGGGc -3' miRNA: 3'- aGGUGCCGGG---GCUUCGCuaGGGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 203627 | 0.7 | 0.6367 |
Target: 5'- aCCGCGGUCCCccGGCuccuccUCCCAGAAa -3' miRNA: 3'- aGGUGCCGGGGcuUCGcu----AGGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 105056 | 0.69 | 0.665959 |
Target: 5'- -gCGCGagcaGCCCCaGggGCGAUCCCAc-- -3' miRNA: 3'- agGUGC----CGGGG-CuuCGCUAGGGUcuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 234211 | 0.69 | 0.675673 |
Target: 5'- -gCGCGGCCuCCGAAGaCGGUUCCGu-- -3' miRNA: 3'- agGUGCCGG-GGCUUC-GCUAGGGUcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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