Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 3' | -59.6 | NC_003521.1 | + | 92042 | 0.66 | 0.851178 |
Target: 5'- gCCGCGGCuCCuCGgcGCGAccgccgagggcaCCCAGAu -3' miRNA: 3'- aGGUGCCG-GG-GCuuCGCUa-----------GGGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 146358 | 0.66 | 0.85268 |
Target: 5'- aCCGC-GCCguacaCGggGCGGUUCCGGGu -3' miRNA: 3'- aGGUGcCGGg----GCuuCGCUAGGGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 14445 | 0.66 | 0.859349 |
Target: 5'- -aCACGGCCCUGcGGCGGcgucagccgccgcUCCCGc-- -3' miRNA: 3'- agGUGCCGGGGCuUCGCU-------------AGGGUcuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 30091 | 0.66 | 0.860081 |
Target: 5'- gCCACGGCCUa----CGAUUCCGGGAc -3' miRNA: 3'- aGGUGCCGGGgcuucGCUAGGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 199998 | 0.66 | 0.860081 |
Target: 5'- gUCCAUGgcgcgggccccGCCCCGAGGCGAauagcugaccgCgCCGGGAg -3' miRNA: 3'- -AGGUGC-----------CGGGGCUUCGCUa----------G-GGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 144866 | 0.67 | 0.813069 |
Target: 5'- cCCGCGGguCCCCGAAcCGcAUCCguGAGg -3' miRNA: 3'- aGGUGCC--GGGGCUUcGC-UAGGguCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 106760 | 0.67 | 0.813069 |
Target: 5'- gUCCAgGGCgCCC-AGGCGGUCgaaaCCAGGc -3' miRNA: 3'- -AGGUgCCG-GGGcUUCGCUAG----GGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 181610 | 0.67 | 0.787453 |
Target: 5'- gUCCAgGGCCCCGAucuccacGCGA--CUAGGAu -3' miRNA: 3'- -AGGUgCCGGGGCUu------CGCUagGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 178719 | 0.71 | 0.57827 |
Target: 5'- cCCGCgcgGGCgCCGAAGCGuUCCCGGu- -3' miRNA: 3'- aGGUG---CCGgGGCUUCGCuAGGGUCuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 120552 | 0.7 | 0.617165 |
Target: 5'- cCgGCGGUCCCGggG-GAgcgCCCGGGGa -3' miRNA: 3'- aGgUGCCGGGGCuuCgCUa--GGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 42815 | 0.7 | 0.626931 |
Target: 5'- gCCACGGuCCCCGAacgcaacuguGGCGuaugcuacCCCGGGAa -3' miRNA: 3'- aGGUGCC-GGGGCU----------UCGCua------GGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 29939 | 0.69 | 0.656222 |
Target: 5'- -gCACGGCCaCCGAGGCGAcguacaCCCuGGg -3' miRNA: 3'- agGUGCCGG-GGCUUCGCUa-----GGGuCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 166678 | 0.69 | 0.656222 |
Target: 5'- aCCugGGCCCCGuGGCGcgCCa---- -3' miRNA: 3'- aGGugCCGGGGCuUCGCuaGGgucuu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 40321 | 0.69 | 0.675673 |
Target: 5'- cUCCGaucCGGCCuCCGcuGCgGGUCCCGGGGg -3' miRNA: 3'- -AGGU---GCCGG-GGCuuCG-CUAGGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 175120 | 0.69 | 0.685353 |
Target: 5'- gCCGCGGCgCCGcuGUccuucuugccuGGUCCCGGAAg -3' miRNA: 3'- aGGUGCCGgGGCuuCG-----------CUAGGGUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 84042 | 0.68 | 0.723596 |
Target: 5'- gUCCACGGCCaCCuucucGAGCGAgaggCCCuGGc -3' miRNA: 3'- -AGGUGCCGG-GGc----UUCGCUa---GGGuCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 209272 | 0.68 | 0.723596 |
Target: 5'- aCCugGGCUUCGccGAGUGGUCgCAGAc -3' miRNA: 3'- aGGugCCGGGGC--UUCGCUAGgGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 4535 | 0.68 | 0.74232 |
Target: 5'- aCCGCaucGCCCCGAGGCGuugcUCUgAGGAu -3' miRNA: 3'- aGGUGc--CGGGGCUUCGCu---AGGgUCUU- -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 161141 | 0.68 | 0.74232 |
Target: 5'- -aCGCGGCCgCG-GGCGGUCgCGGAc -3' miRNA: 3'- agGUGCCGGgGCuUCGCUAGgGUCUu -5' |
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14630 | 3' | -59.6 | NC_003521.1 | + | 178983 | 0.73 | 0.448608 |
Target: 5'- gCCGCGGUUCCGcGGCGcccUCCCAGGg -3' miRNA: 3'- aGGUGCCGGGGCuUCGCu--AGGGUCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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