miRNA display CGI


Results 81 - 90 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 150669 0.66 0.937803
Target:  5'- cUCUCcgGCGG-CGGCGCCgcugcugcUGGGUg-- -3'
miRNA:   3'- -AGAGuaCGCCuGUUGCGG--------GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 232393 0.66 0.933046
Target:  5'- gUCUCGcGCuGGCuGCGCCUGcGGCAc- -3'
miRNA:   3'- -AGAGUaCGcCUGuUGCGGGC-CCGUag -5'
14630 5' -57.2 NC_003521.1 + 128455 0.66 0.933046
Target:  5'- gCUCGcccagGCGGAUcACGUCCauGGGCAg- -3'
miRNA:   3'- aGAGUa----CGCCUGuUGCGGG--CCCGUag -5'
14630 5' -57.2 NC_003521.1 + 122962 0.66 0.922862
Target:  5'- --aCGUGCGGGguagcCAGacCGUCaCGGGCAUCu -3'
miRNA:   3'- agaGUACGCCU-----GUU--GCGG-GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 77736 0.66 0.917436
Target:  5'- cCUCG-GUGGGCGGCGUCUGGuaGUg -3'
miRNA:   3'- aGAGUaCGCCUGUUGCGGGCCcgUAg -5'
14630 5' -57.2 NC_003521.1 + 152752 0.66 0.911786
Target:  5'- cCUCca-CGGGCAGCGCgCGgaacGGCGUCg -3'
miRNA:   3'- aGAGuacGCCUGUUGCGgGC----CCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 83682 0.66 0.911786
Target:  5'- cCUCGcgcgugacguUGUGGAC-GCGCgagCGGGCGUCc -3'
miRNA:   3'- aGAGU----------ACGCCUGuUGCGg--GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 173038 0.66 0.917436
Target:  5'- gCUCGccgGUGGGCAGCuggGUCUGGGUGUUg -3'
miRNA:   3'- aGAGUa--CGCCUGUUG---CGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 170864 0.66 0.917436
Target:  5'- uUCUCcgcggggGCGGGCGcggguggucagGCGUCCG-GCGUCg -3'
miRNA:   3'- -AGAGua-----CGCCUGU-----------UGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 195746 0.66 0.937803
Target:  5'- aUCgggCAcGCGGAaGAUGUCCGGGUuUCc -3'
miRNA:   3'- -AGa--GUaCGCCUgUUGCGGGCCCGuAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.