Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 122732 | 0.66 | 0.930085 |
Target: 5'- -gUCGUGgGcGACGGCGCcgccgauggcugacaCCGGGCAc- -3' miRNA: 3'- agAGUACgC-CUGUUGCG---------------GGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 18161 | 0.66 | 0.930085 |
Target: 5'- gCUCAUGCuGGGCAgcguggaggcgcugcGCGCCUGccGGCccuUCg -3' miRNA: 3'- aGAGUACG-CCUGU---------------UGCGGGC--CCGu--AG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 120543 | 0.66 | 0.931575 |
Target: 5'- cCUCG-GCGGcCGgcggucccgggggaGCGCCCGGGgAUa -3' miRNA: 3'- aGAGUaCGCCuGU--------------UGCGGGCCCgUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 138332 | 0.66 | 0.933046 |
Target: 5'- cCUgCGgcUGCGcGACGGCGUCuCGGGCcUCu -3' miRNA: 3'- aGA-GU--ACGC-CUGUUGCGG-GCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 232393 | 0.66 | 0.933046 |
Target: 5'- gUCUCGcGCuGGCuGCGCCUGcGGCAc- -3' miRNA: 3'- -AGAGUaCGcCUGuUGCGGGC-CCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 128455 | 0.66 | 0.933046 |
Target: 5'- gCUCGcccagGCGGAUcACGUCCauGGGCAg- -3' miRNA: 3'- aGAGUa----CGCCUGuUGCGGG--CCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 91916 | 0.66 | 0.933046 |
Target: 5'- gCUCgAUGcCGcGGCGGCGCUCcucGGCGUCg -3' miRNA: 3'- aGAG-UAC-GC-CUGUUGCGGGc--CCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 229265 | 0.66 | 0.937803 |
Target: 5'- -gUCcgGCGcacGACGGCGCCgGaGGCGUa -3' miRNA: 3'- agAGuaCGC---CUGUUGCGGgC-CCGUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 150669 | 0.66 | 0.937803 |
Target: 5'- cUCUCcgGCGG-CGGCGCCgcugcugcUGGGUg-- -3' miRNA: 3'- -AGAGuaCGCCuGUUGCGG--------GCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 195746 | 0.66 | 0.937803 |
Target: 5'- aUCgggCAcGCGGAaGAUGUCCGGGUuUCc -3' miRNA: 3'- -AGa--GUaCGCCUgUUGCGGGCCCGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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