Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 14630 | 5' | -57.2 | NC_003521.1 | + | 145276 | 0.67 | 0.899826 |
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Target: 5'- cCUCG-GCGGcCAgcucGCGCgccggcgucucgCCGGGCAUCc -3' miRNA: 3'- aGAGUaCGCCuGU----UGCG------------GGCCCGUAG- -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 216288 | 0.68 | 0.858858 |
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Target: 5'- gCUCGUggaGCGGACGACGUUggCGGGgGUg -3' miRNA: 3'- aGAGUA---CGCCUGUUGCGG--GCCCgUAg -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 156623 | 0.68 | 0.866193 |
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Target: 5'- cCUgGUGCuGcGCGACGCCCuGGGCuUCc -3' miRNA: 3'- aGAgUACGcC-UGUUGCGGG-CCCGuAG- -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 119032 | 0.68 | 0.873332 |
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Target: 5'- aUUCGgauaggGCGGGCGGCGUCgGGGUg-- -3' miRNA: 3'- aGAGUa-----CGCCUGUUGCGGgCCCGuag -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 73706 | 0.67 | 0.880268 |
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Target: 5'- cUUCGUGgaGcGCAGCGaCCCGGGCcgCg -3' miRNA: 3'- aGAGUACg-CcUGUUGC-GGGCCCGuaG- -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 31618 | 0.67 | 0.882986 |
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Target: 5'- -gUCAggugGCGGAUggccgguagguggaaAGCGCCCaGGUGUCg -3' miRNA: 3'- agAGUa---CGCCUG---------------UUGCGGGcCCGUAG- -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 46065 | 0.67 | 0.89352 |
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Target: 5'- --cCggGCGGgaugaggucGCGACGCCCG-GCGUCg -3' miRNA: 3'- agaGuaCGCC---------UGUUGCGGGCcCGUAG- -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 150431 | 0.67 | 0.89352 |
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Target: 5'- gUCgCGUGCaGGAgAgcGCGCCCGGG-GUCc -3' miRNA: 3'- -AGaGUACG-CCUgU--UGCGGGCCCgUAG- -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 130223 | 0.67 | 0.899826 |
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Target: 5'- cCUCAUGgUGGAgAucggccGCGUgCUGGGCGUCa -3' miRNA: 3'- aGAGUAC-GCCUgU------UGCG-GGCCCGUAG- -5' |
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| 14630 | 5' | -57.2 | NC_003521.1 | + | 229265 | 0.66 | 0.937803 |
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Target: 5'- -gUCcgGCGcacGACGGCGCCgGaGGCGUa -3' miRNA: 3'- agAGuaCGC---CUGUUGCGGgC-CCGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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