Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14630 | 5' | -57.2 | NC_003521.1 | + | 128455 | 0.66 | 0.933046 |
Target: 5'- gCUCGcccagGCGGAUcACGUCCauGGGCAg- -3' miRNA: 3'- aGAGUa----CGCCUGuUGCGGG--CCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 83682 | 0.66 | 0.911786 |
Target: 5'- cCUCGcgcgugacguUGUGGAC-GCGCgagCGGGCGUCc -3' miRNA: 3'- aGAGU----------ACGCCUGuUGCGg--GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 77736 | 0.66 | 0.917436 |
Target: 5'- cCUCG-GUGGGCGGCGUCUGGuaGUg -3' miRNA: 3'- aGAGUaCGCCUGUUGCGGGCCcgUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 122962 | 0.66 | 0.922862 |
Target: 5'- --aCGUGCGGGguagcCAGacCGUCaCGGGCAUCu -3' miRNA: 3'- agaGUACGCCU-----GUU--GCGG-GCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 164434 | 0.66 | 0.928066 |
Target: 5'- -aUCGgcaagGUGGAgGGCGCCgCGGGCc-- -3' miRNA: 3'- agAGUa----CGCCUgUUGCGG-GCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 150669 | 0.66 | 0.937803 |
Target: 5'- cUCUCcgGCGG-CGGCGCCgcugcugcUGGGUg-- -3' miRNA: 3'- -AGAGuaCGCCuGUUGCGG--------GCCCGuag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 229265 | 0.66 | 0.937803 |
Target: 5'- -gUCcgGCGcacGACGGCGCCgGaGGCGUa -3' miRNA: 3'- agAGuaCGC---CUGUUGCGGgC-CCGUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 184021 | 0.66 | 0.928066 |
Target: 5'- aCUCGUucGCGcGCGACGCCgguUGGGCGg- -3' miRNA: 3'- aGAGUA--CGCcUGUUGCGG---GCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 94862 | 0.66 | 0.922862 |
Target: 5'- gCUCAUagauguugagGCGGccCAGCaGCUCGGGCGUg -3' miRNA: 3'- aGAGUA----------CGCCu-GUUG-CGGGCCCGUAg -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 152752 | 0.66 | 0.911786 |
Target: 5'- cCUCca-CGGGCAGCGCgCGgaacGGCGUCg -3' miRNA: 3'- aGAGuacGCCUGUUGCGgGC----CCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 18161 | 0.66 | 0.930085 |
Target: 5'- gCUCAUGCuGGGCAgcguggaggcgcugcGCGCCUGccGGCccuUCg -3' miRNA: 3'- aGAGUACG-CCUGU---------------UGCGGGC--CCGu--AG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 183012 | 0.66 | 0.917436 |
Target: 5'- cUUCAUGCGG-CAGC---UGGGCGUCg -3' miRNA: 3'- aGAGUACGCCuGUUGcggGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 173038 | 0.66 | 0.917436 |
Target: 5'- gCUCGccgGUGGGCAGCuggGUCUGGGUGUUg -3' miRNA: 3'- aGAGUa--CGCCUGUUG---CGGGCCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 232393 | 0.66 | 0.933046 |
Target: 5'- gUCUCGcGCuGGCuGCGCCUGcGGCAc- -3' miRNA: 3'- -AGAGUaCGcCUGuUGCGGGC-CCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 16117 | 0.66 | 0.928066 |
Target: 5'- --aCggGCgGGACGugaacuuccacACGCCCGGGCGc- -3' miRNA: 3'- agaGuaCG-CCUGU-----------UGCGGGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 195746 | 0.66 | 0.937803 |
Target: 5'- aUCgggCAcGCGGAaGAUGUCCGGGUuUCc -3' miRNA: 3'- -AGa--GUaCGCCUgUUGCGGGCCCGuAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 122732 | 0.66 | 0.930085 |
Target: 5'- -gUCGUGgGcGACGGCGCcgccgauggcugacaCCGGGCAc- -3' miRNA: 3'- agAGUACgC-CUGUUGCG---------------GGCCCGUag -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 170864 | 0.66 | 0.917436 |
Target: 5'- uUCUCcgcggggGCGGGCGcggguggucagGCGUCCG-GCGUCg -3' miRNA: 3'- -AGAGua-----CGCCUGU-----------UGCGGGCcCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 166704 | 0.66 | 0.922862 |
Target: 5'- -gUCcUGC--ACGGCGCCCauGGGCGUCg -3' miRNA: 3'- agAGuACGccUGUUGCGGG--CCCGUAG- -5' |
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14630 | 5' | -57.2 | NC_003521.1 | + | 174088 | 0.66 | 0.928066 |
Target: 5'- gUC-CAgucGCGGcACGAUGgCCGGGCAc- -3' miRNA: 3'- -AGaGUa--CGCC-UGUUGCgGGCCCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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