miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 1835 0.71 0.709511
Target:  5'- cCUCAgcaugGCGGACGACagaccgggacgggGCCCGGcGCcUCu -3'
miRNA:   3'- aGAGUa----CGCCUGUUG-------------CGGGCC-CGuAG- -5'
14630 5' -57.2 NC_003521.1 + 4435 0.68 0.835726
Target:  5'- aCUCc--CGGAgAACGCCCGaGGCgAUCu -3'
miRNA:   3'- aGAGuacGCCUgUUGCGGGC-CCG-UAG- -5'
14630 5' -57.2 NC_003521.1 + 12237 0.71 0.720095
Target:  5'- gCUC-UGCGGGC-ACGCCgacaaccucaaGGGCGUCu -3'
miRNA:   3'- aGAGuACGCCUGuUGCGGg----------CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 12548 0.69 0.825208
Target:  5'- --cCGUGgaGGACGccgagcgucuggagAUGCCCGGGCGUUg -3'
miRNA:   3'- agaGUACg-CCUGU--------------UGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 13866 0.69 0.791178
Target:  5'- gUCUC-UGCGGGCGGCGCcgccauggauuucgCCGGGgGg- -3'
miRNA:   3'- -AGAGuACGCCUGUUGCG--------------GGCCCgUag -5'
14630 5' -57.2 NC_003521.1 + 15741 0.68 0.85133
Target:  5'- gUUCcUGCaGGu--GCGCCCGGGCAg- -3'
miRNA:   3'- aGAGuACG-CCuguUGCGGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 16117 0.66 0.928066
Target:  5'- --aCggGCgGGACGugaacuuccacACGCCCGGGCGc- -3'
miRNA:   3'- agaGuaCG-CCUGU-----------UGCGGGCCCGUag -5'
14630 5' -57.2 NC_003521.1 + 16485 0.67 0.886336
Target:  5'- gUCUaCGUGCGG-CGACGCUacgagcaCGGGCu-- -3'
miRNA:   3'- -AGA-GUACGCCuGUUGCGG-------GCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 16602 0.68 0.858858
Target:  5'- ---gGUGUGGACcGCGacuaCGGGCGUCa -3'
miRNA:   3'- agagUACGCCUGuUGCgg--GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 18161 0.66 0.930085
Target:  5'- gCUCAUGCuGGGCAgcguggaggcgcugcGCGCCUGccGGCccuUCg -3'
miRNA:   3'- aGAGUACG-CCUGU---------------UGCGGGC--CCGu--AG- -5'
14630 5' -57.2 NC_003521.1 + 21722 0.67 0.89352
Target:  5'- gCUCAUGUGGcuggugACGAUGCCCGaacaGGUcUCg -3'
miRNA:   3'- aGAGUACGCC------UGUUGCGGGC----CCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 22632 0.67 0.880268
Target:  5'- gCUCAU-CGGcACcugcuACGCCUGGGuCGUCg -3'
miRNA:   3'- aGAGUAcGCC-UGu----UGCGGGCCC-GUAG- -5'
14630 5' -57.2 NC_003521.1 + 30689 0.68 0.835726
Target:  5'- cCUCAUGaGGcuuauaacaacGCGGCGCCgCGGGC-UCa -3'
miRNA:   3'- aGAGUACgCC-----------UGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 31618 0.67 0.882986
Target:  5'- -gUCAggugGCGGAUggccgguagguggaaAGCGCCCaGGUGUCg -3'
miRNA:   3'- agAGUa---CGCCUG---------------UUGCGGGcCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 34283 0.69 0.82766
Target:  5'- -gUCAcGgGGGCGG-GCCaCGGGCGUCa -3'
miRNA:   3'- agAGUaCgCCUGUUgCGG-GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 36809 0.71 0.69106
Target:  5'- gCUC--GCGGACGGCGgaCUCGGGCAUg -3'
miRNA:   3'- aGAGuaCGCCUGUUGC--GGGCCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 37388 0.68 0.866193
Target:  5'- gUUCGagGCGGcgGgGGCGCCCGGGCcUUg -3'
miRNA:   3'- aGAGUa-CGCC--UgUUGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 46065 0.67 0.89352
Target:  5'- --cCggGCGGgaugaggucGCGACGCCCG-GCGUCg -3'
miRNA:   3'- agaGuaCGCC---------UGUUGCGGGCcCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 47987 0.67 0.899826
Target:  5'- uUCUCGUccaCGGAC-GCGCCgcCGGGCuUCu -3'
miRNA:   3'- -AGAGUAc--GCCUGuUGCGG--GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 59162 0.76 0.433484
Target:  5'- -aUCAgcUGCGGcACGGCGCCgCGGGCAgUCa -3'
miRNA:   3'- agAGU--ACGCC-UGUUGCGG-GCCCGU-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.