miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14630 5' -57.2 NC_003521.1 + 62411 0.68 0.858858
Target:  5'- cCUCG-GCGGcuacCAGUGUCUGGGCAUCu -3'
miRNA:   3'- aGAGUaCGCCu---GUUGCGGGCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 224081 0.69 0.819429
Target:  5'- cCUCcgGCGGGCGcgcGCGCCgGcGGUcgCc -3'
miRNA:   3'- aGAGuaCGCCUGU---UGCGGgC-CCGuaG- -5'
14630 5' -57.2 NC_003521.1 + 224798 0.69 0.819429
Target:  5'- -gUCGUGCGGgacgcGCGugGCguaGGGCGUCu -3'
miRNA:   3'- agAGUACGCC-----UGUugCGgg-CCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 178785 0.69 0.82766
Target:  5'- gUCUCGuuguUGCaGGACgGGCcCCCGGGCAccUCg -3'
miRNA:   3'- -AGAGU----ACG-CCUG-UUGcGGGCCCGU--AG- -5'
14630 5' -57.2 NC_003521.1 + 182169 0.69 0.82766
Target:  5'- aCUCGUGaCGGACGgccgGCGCgUGGGgAUUc -3'
miRNA:   3'- aGAGUAC-GCCUGU----UGCGgGCCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 74216 0.68 0.833324
Target:  5'- gUCUUcUGCcacguccugcgacaGGugGGCGUCaCGGGCAUCu -3'
miRNA:   3'- -AGAGuACG--------------CCugUUGCGG-GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 30689 0.68 0.835726
Target:  5'- cCUCAUGaGGcuuauaacaacGCGGCGCCgCGGGC-UCa -3'
miRNA:   3'- aGAGUACgCC-----------UGUUGCGG-GCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 4435 0.68 0.835726
Target:  5'- aCUCc--CGGAgAACGCCCGaGGCgAUCu -3'
miRNA:   3'- aGAGuacGCCUgUUGCGGGC-CCG-UAG- -5'
14630 5' -57.2 NC_003521.1 + 61978 0.68 0.843618
Target:  5'- gUCUCG-GUGGACcaAGCGCagCGGGaCAUCu -3'
miRNA:   3'- -AGAGUaCGCCUG--UUGCGg-GCCC-GUAG- -5'
14630 5' -57.2 NC_003521.1 + 115646 0.69 0.819429
Target:  5'- gCUCGUGCGuGuCGGCGCCCcaguGGCGg- -3'
miRNA:   3'- aGAGUACGC-CuGUUGCGGGc---CCGUag -5'
14630 5' -57.2 NC_003521.1 + 112984 0.69 0.802497
Target:  5'- gCUCAgcgGCGGGCGccACuaccaCCCGGGCAccuUCg -3'
miRNA:   3'- aGAGUa--CGCCUGU--UGc----GGGCCCGU---AG- -5'
14630 5' -57.2 NC_003521.1 + 99504 0.69 0.802497
Target:  5'- aCUCGUGCcgcuGGAgGGCGCCCaGG-AUCa -3'
miRNA:   3'- aGAGUACG----CCUgUUGCGGGcCCgUAG- -5'
14630 5' -57.2 NC_003521.1 + 59162 0.76 0.433484
Target:  5'- -aUCAgcUGCGGcACGGCGCCgCGGGCAgUCa -3'
miRNA:   3'- agAGU--ACGCC-UGUUGCGG-GCCCGU-AG- -5'
14630 5' -57.2 NC_003521.1 + 119613 0.72 0.631963
Target:  5'- gUCUCGUGCugcaGGugGACguuuacccacugGCCgCGGGCGUCc -3'
miRNA:   3'- -AGAGUACG----CCugUUG------------CGG-GCCCGUAG- -5'
14630 5' -57.2 NC_003521.1 + 202062 0.71 0.709511
Target:  5'- cCUCAgcaugGCGGACGACagaccgggacgggGCCCGGcGCcUCu -3'
miRNA:   3'- aGAGUa----CGCCUGUUG-------------CGGGCC-CGuAG- -5'
14630 5' -57.2 NC_003521.1 + 141302 0.7 0.739113
Target:  5'- gCagGUGCGGGCGGCGCcCCGGaGCc-- -3'
miRNA:   3'- aGagUACGCCUGUUGCG-GGCC-CGuag -5'
14630 5' -57.2 NC_003521.1 + 144104 0.7 0.746627
Target:  5'- cCUCAUGCGGcugcuggaccgccGCGgccuggacgagguGCGCCUGGGC-UCc -3'
miRNA:   3'- aGAGUACGCC-------------UGU-------------UGCGGGCCCGuAG- -5'
14630 5' -57.2 NC_003521.1 + 194156 0.7 0.748496
Target:  5'- cCUCG-GCGGGCGGuuccauCGCCCGGGUu-- -3'
miRNA:   3'- aGAGUaCGCCUGUU------GCGGGCCCGuag -5'
14630 5' -57.2 NC_003521.1 + 224678 0.7 0.757783
Target:  5'- cUUCA-GCGucuuGGCGugGCGCCCGGGCGUg -3'
miRNA:   3'- aGAGUaCGC----CUGU--UGCGGGCCCGUAg -5'
14630 5' -57.2 NC_003521.1 + 96795 0.69 0.802497
Target:  5'- -----aGCGG-CGGCGCUCGGGCAcgaUCg -3'
miRNA:   3'- agaguaCGCCuGUUGCGGGCCCGU---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.