miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 228437 1.13 0.004555
Target:  5'- cAGCACGAACUCGGCGUGAAAGAGGCCg -3'
miRNA:   3'- -UCGUGCUUGAGCCGCACUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 76239 0.79 0.505059
Target:  5'- cGCACGucCUCGaGCGUGAggcgcGAGAGGCg -3'
miRNA:   3'- uCGUGCuuGAGC-CGCACU-----UUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 139087 0.79 0.505059
Target:  5'- gGGCugGAcuACguguUCGGCGUGAAGGAcGCCg -3'
miRNA:   3'- -UCGugCU--UG----AGCCGCACUUUCUcCGG- -5'
14631 3' -53.6 NC_003521.1 + 186755 0.78 0.514627
Target:  5'- uGCugGGGCUCGGCGgcaucGgcGGAGGCg -3'
miRNA:   3'- uCGugCUUGAGCCGCa----CuuUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 103527 0.78 0.542768
Target:  5'- cGCGCGAACUCGcucauggaggcguGCGUGggGaugacGGGGCCc -3'
miRNA:   3'- uCGUGCUUGAGC-------------CGCACuuU-----CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 97522 0.78 0.543748
Target:  5'- cGCA-GAGCUCGGgGUGGucGAGGCg -3'
miRNA:   3'- uCGUgCUUGAGCCgCACUuuCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 127777 0.77 0.56346
Target:  5'- uGCugGAGCaCGGCGcguuugUGAAAGAGGCg -3'
miRNA:   3'- uCGugCUUGaGCCGC------ACUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 87753 0.77 0.573388
Target:  5'- cGGCcCGGGCccCGGCGgcGGAGGAGGCCu -3'
miRNA:   3'- -UCGuGCUUGa-GCCGCa-CUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 111091 0.77 0.593359
Target:  5'- cGGCGCGGacgcGCUCGGCGUcGAc--GGGCCg -3'
miRNA:   3'- -UCGUGCU----UGAGCCGCA-CUuucUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 40399 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 77 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 240626 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 213385 0.76 0.653705
Target:  5'- cGGC-CGAAUUCGGCcUGGGcugccuGGAGGCCu -3'
miRNA:   3'- -UCGuGCUUGAGCCGcACUU------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 102728 0.75 0.673769
Target:  5'- gAGCACGcagacCUCGGCcUGGGAG-GGCCa -3'
miRNA:   3'- -UCGUGCuu---GAGCCGcACUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 191378 0.75 0.683755
Target:  5'- aAGCGCGcAgaCGGCGUGGAGGAccaGGCUc -3'
miRNA:   3'- -UCGUGCuUgaGCCGCACUUUCU---CCGG- -5'
14631 3' -53.6 NC_003521.1 + 78534 0.75 0.6937
Target:  5'- -cCGCGGACUccCGGCGUGAcggugcAGAGGCUg -3'
miRNA:   3'- ucGUGCUUGA--GCCGCACUu-----UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 150767 0.75 0.713433
Target:  5'- -cCGCGAGCgcgUCGGCGUcccgGAGcuGGAGGCCg -3'
miRNA:   3'- ucGUGCUUG---AGCCGCA----CUU--UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 109688 0.75 0.714413
Target:  5'- cAGCAgguaGAGCUCcuGGCGggcgaaggccgagagGAAGGAGGCCa -3'
miRNA:   3'- -UCGUg---CUUGAG--CCGCa--------------CUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 224838 0.74 0.732897
Target:  5'- cGGUagAUGGACUCGGUGU-AGAGcAGGCCg -3'
miRNA:   3'- -UCG--UGCUUGAGCCGCAcUUUC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 148648 0.74 0.742507
Target:  5'- cGGCccCGAGCUCGGCGgGGAu--GGCCg -3'
miRNA:   3'- -UCGu-GCUUGAGCCGCaCUUucuCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.