miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 77 0.76 0.633575
Target:  5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3'
miRNA:   3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 9478 0.71 0.877851
Target:  5'- uAGCgauccaaaGCGAuCUCGGUGaUGAAgcAGAGGCUg -3'
miRNA:   3'- -UCG--------UGCUuGAGCCGC-ACUU--UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 13640 0.7 0.927002
Target:  5'- gGGCugGGAagggCGGCGgaggcggGAGAaGAGGCUc -3'
miRNA:   3'- -UCGugCUUga--GCCGCa------CUUU-CUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 13895 0.72 0.823749
Target:  5'- cGCcgGgGGGCcCGGCGcGGAGGGGGCCg -3'
miRNA:   3'- uCG--UgCUUGaGCCGCaCUUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 16506 0.66 0.984525
Target:  5'- gAGCACGGGCUgCGGCGcucggcucgGcuGGAGcGCa -3'
miRNA:   3'- -UCGUGCUUGA-GCCGCa--------CuuUCUC-CGg -5'
14631 3' -53.6 NC_003521.1 + 17180 0.67 0.976154
Target:  5'- cGCugGcAGCUgGGCaggcgcaucGUGGAcgccuaccagacGGAGGCCg -3'
miRNA:   3'- uCGugC-UUGAgCCG---------CACUU------------UCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 17240 0.68 0.961197
Target:  5'- uGGCaaGCGAGC-CGGCGUcuucgguGGAAGAGGa- -3'
miRNA:   3'- -UCG--UGCUUGaGCCGCA-------CUUUCUCCgg -5'
14631 3' -53.6 NC_003521.1 + 22979 0.69 0.95425
Target:  5'- uGCugGGGCUCuGCGccugguugacggUGAuagcggcauccgAGGAGGCCa -3'
miRNA:   3'- uCGugCUUGAGcCGC------------ACU------------UUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 27249 0.69 0.946078
Target:  5'- gAGCACGGGCUCGcCGaUGAu-GcGGCCc -3'
miRNA:   3'- -UCGUGCUUGAGCcGC-ACUuuCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 27448 0.73 0.80667
Target:  5'- aGGC-CGAAUUCGGcCGUGAGcgccAGGcuGGCCa -3'
miRNA:   3'- -UCGuGCUUGAGCC-GCACUU----UCU--CCGG- -5'
14631 3' -53.6 NC_003521.1 + 30181 0.67 0.978503
Target:  5'- cGCAUGAGCgcgCGGU-UGAcguAGAaGGCCg -3'
miRNA:   3'- uCGUGCUUGa--GCCGcACUu--UCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 31672 0.71 0.870715
Target:  5'- aGGCGC-AGCUCGGCGUucuccagguGAAAGugGGGCg -3'
miRNA:   3'- -UCGUGcUUGAGCCGCA---------CUUUC--UCCGg -5'
14631 3' -53.6 NC_003521.1 + 33094 0.67 0.979393
Target:  5'- uGCACGGGCUccagccagccgaugaCGGCGU---AGcGGGCCu -3'
miRNA:   3'- uCGUGCUUGA---------------GCCGCAcuuUC-UCCGG- -5'
14631 3' -53.6 NC_003521.1 + 34061 0.7 0.927002
Target:  5'- cAGCuuGAGCUCGGgguugaccuCGUGcAGGGAGGUg -3'
miRNA:   3'- -UCGugCUUGAGCC---------GCAC-UUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 34332 0.71 0.89797
Target:  5'- cGUugGAAg-CGGCGcagGgcGGAGGCCg -3'
miRNA:   3'- uCGugCUUgaGCCGCa--CuuUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 34537 0.68 0.970901
Target:  5'- cGCGCGAGCggcgacagaguUCGGCcuuGUGGucGGGGUg -3'
miRNA:   3'- uCGUGCUUG-----------AGCCG---CACUuuCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 36408 0.7 0.91027
Target:  5'- cAGCGC---CUCGaGCGUGAcgGAGAaGGCCu -3'
miRNA:   3'- -UCGUGcuuGAGC-CGCACU--UUCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 36409 0.66 0.986216
Target:  5'- cAGCGCGG----GGCGUGGAuuucgcggucGGAgGGCCg -3'
miRNA:   3'- -UCGUGCUugagCCGCACUU----------UCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 36584 0.72 0.840153
Target:  5'- uGCGCGAACUggccUGGCG-GcgGGuGGCCg -3'
miRNA:   3'- uCGUGCUUGA----GCCGCaCuuUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 36664 0.67 0.978503
Target:  5'- gAGUACGuggggguCUCGGCc-GAGcuGAGGCCg -3'
miRNA:   3'- -UCGUGCuu-----GAGCCGcaCUUu-CUCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.