Results 1 - 20 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14631 | 3' | -53.6 | NC_003521.1 | + | 77 | 0.76 | 0.633575 |
Target: 5'- uGCGCGugucGCUUgccgcgGGCGUGcAGGGAGGCCg -3' miRNA: 3'- uCGUGCu---UGAG------CCGCAC-UUUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 9478 | 0.71 | 0.877851 |
Target: 5'- uAGCgauccaaaGCGAuCUCGGUGaUGAAgcAGAGGCUg -3' miRNA: 3'- -UCG--------UGCUuGAGCCGC-ACUU--UCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 13640 | 0.7 | 0.927002 |
Target: 5'- gGGCugGGAagggCGGCGgaggcggGAGAaGAGGCUc -3' miRNA: 3'- -UCGugCUUga--GCCGCa------CUUU-CUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 13895 | 0.72 | 0.823749 |
Target: 5'- cGCcgGgGGGCcCGGCGcGGAGGGGGCCg -3' miRNA: 3'- uCG--UgCUUGaGCCGCaCUUUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 16506 | 0.66 | 0.984525 |
Target: 5'- gAGCACGGGCUgCGGCGcucggcucgGcuGGAGcGCa -3' miRNA: 3'- -UCGUGCUUGA-GCCGCa--------CuuUCUC-CGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 17180 | 0.67 | 0.976154 |
Target: 5'- cGCugGcAGCUgGGCaggcgcaucGUGGAcgccuaccagacGGAGGCCg -3' miRNA: 3'- uCGugC-UUGAgCCG---------CACUU------------UCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 17240 | 0.68 | 0.961197 |
Target: 5'- uGGCaaGCGAGC-CGGCGUcuucgguGGAAGAGGa- -3' miRNA: 3'- -UCG--UGCUUGaGCCGCA-------CUUUCUCCgg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 22979 | 0.69 | 0.95425 |
Target: 5'- uGCugGGGCUCuGCGccugguugacggUGAuagcggcauccgAGGAGGCCa -3' miRNA: 3'- uCGugCUUGAGcCGC------------ACU------------UUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 27249 | 0.69 | 0.946078 |
Target: 5'- gAGCACGGGCUCGcCGaUGAu-GcGGCCc -3' miRNA: 3'- -UCGUGCUUGAGCcGC-ACUuuCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 27448 | 0.73 | 0.80667 |
Target: 5'- aGGC-CGAAUUCGGcCGUGAGcgccAGGcuGGCCa -3' miRNA: 3'- -UCGuGCUUGAGCC-GCACUU----UCU--CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 30181 | 0.67 | 0.978503 |
Target: 5'- cGCAUGAGCgcgCGGU-UGAcguAGAaGGCCg -3' miRNA: 3'- uCGUGCUUGa--GCCGcACUu--UCU-CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 31672 | 0.71 | 0.870715 |
Target: 5'- aGGCGC-AGCUCGGCGUucuccagguGAAAGugGGGCg -3' miRNA: 3'- -UCGUGcUUGAGCCGCA---------CUUUC--UCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 33094 | 0.67 | 0.979393 |
Target: 5'- uGCACGGGCUccagccagccgaugaCGGCGU---AGcGGGCCu -3' miRNA: 3'- uCGUGCUUGA---------------GCCGCAcuuUC-UCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 34061 | 0.7 | 0.927002 |
Target: 5'- cAGCuuGAGCUCGGgguugaccuCGUGcAGGGAGGUg -3' miRNA: 3'- -UCGugCUUGAGCC---------GCAC-UUUCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 34332 | 0.71 | 0.89797 |
Target: 5'- cGUugGAAg-CGGCGcagGgcGGAGGCCg -3' miRNA: 3'- uCGugCUUgaGCCGCa--CuuUCUCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 34537 | 0.68 | 0.970901 |
Target: 5'- cGCGCGAGCggcgacagaguUCGGCcuuGUGGucGGGGUg -3' miRNA: 3'- uCGUGCUUG-----------AGCCG---CACUuuCUCCGg -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 36408 | 0.7 | 0.91027 |
Target: 5'- cAGCGC---CUCGaGCGUGAcgGAGAaGGCCu -3' miRNA: 3'- -UCGUGcuuGAGC-CGCACU--UUCU-CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 36409 | 0.66 | 0.986216 |
Target: 5'- cAGCGCGG----GGCGUGGAuuucgcggucGGAgGGCCg -3' miRNA: 3'- -UCGUGCUugagCCGCACUU----------UCU-CCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 36584 | 0.72 | 0.840153 |
Target: 5'- uGCGCGAACUggccUGGCG-GcgGGuGGCCg -3' miRNA: 3'- uCGUGCUUGA----GCCGCaCuuUCuCCGG- -5' |
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14631 | 3' | -53.6 | NC_003521.1 | + | 36664 | 0.67 | 0.978503 |
Target: 5'- gAGUACGuggggguCUCGGCc-GAGcuGAGGCCg -3' miRNA: 3'- -UCGUGCuu-----GAGCCGcaCUUu-CUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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