miRNA display CGI


Results 21 - 40 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 3' -53.6 NC_003521.1 + 62972 0.66 0.987613
Target:  5'- cGGCGCaagGAACcCGGCGaGAGuaaacauGGAGGCa -3'
miRNA:   3'- -UCGUG---CUUGaGCCGCaCUU-------UCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 55425 0.66 0.987312
Target:  5'- cGCACGAGaccuccacgucguuCUggaucugggCGGCGcgcUGGAAGAGGCa -3'
miRNA:   3'- uCGUGCUU--------------GA---------GCCGC---ACUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 218788 0.66 0.986377
Target:  5'- gGGCGCGGAaaacaguccgucuuaUCGGCGUc--GGGGuGCCg -3'
miRNA:   3'- -UCGUGCUUg--------------AGCCGCAcuuUCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 136150 0.66 0.986216
Target:  5'- cGGCccccuCGAGCUCcGCGUuuuccGAAGAGGCg -3'
miRNA:   3'- -UCGu----GCUUGAGcCGCAc----UUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 168458 0.66 0.986216
Target:  5'- gAGUACGGGCUgGGCGaggcGGAAGAuGaCCu -3'
miRNA:   3'- -UCGUGCUUGAgCCGCa---CUUUCUcC-GG- -5'
14631 3' -53.6 NC_003521.1 + 105177 0.66 0.986216
Target:  5'- gGGCugGAcucCUCGGUcUGGAAGAgaaaGGCg -3'
miRNA:   3'- -UCGugCUu--GAGCCGcACUUUCU----CCGg -5'
14631 3' -53.6 NC_003521.1 + 204778 0.66 0.986216
Target:  5'- cGGCgGCGGGCUuaCGGCGa-AGAG-GGCCa -3'
miRNA:   3'- -UCG-UGCUUGA--GCCGCacUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 36409 0.66 0.986216
Target:  5'- cAGCGCGG----GGCGUGGAuuucgcggucGGAgGGCCg -3'
miRNA:   3'- -UCGUGCUugagCCGCACUU----------UCU-CCGG- -5'
14631 3' -53.6 NC_003521.1 + 165032 0.66 0.986216
Target:  5'- cAGCAUGGugcuGCcgCGGCGUcugcaccuGGAGGcGGCCu -3'
miRNA:   3'- -UCGUGCU----UGa-GCCGCA--------CUUUCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 213120 0.66 0.986216
Target:  5'- cGCugGGugU-GGCGUGGu-GcGGCCg -3'
miRNA:   3'- uCGugCUugAgCCGCACUuuCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 138910 0.66 0.986216
Target:  5'- gAGUACGccGGCUCGGUGUcGGAccacGGcGGCUg -3'
miRNA:   3'- -UCGUGC--UUGAGCCGCA-CUU----UCuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 155106 0.66 0.986216
Target:  5'- uGCAgGAGCagGGCGUGGAGGAc--- -3'
miRNA:   3'- uCGUgCUUGagCCGCACUUUCUccgg -5'
14631 3' -53.6 NC_003521.1 + 153289 0.66 0.986216
Target:  5'- aAGCGCGAGCcCuGCGUGGu---GGUCa -3'
miRNA:   3'- -UCGUGCUUGaGcCGCACUuucuCCGG- -5'
14631 3' -53.6 NC_003521.1 + 160502 0.66 0.986216
Target:  5'- cAGCA--GACcgCGGCGggaGGAGGGGGCg -3'
miRNA:   3'- -UCGUgcUUGa-GCCGCa--CUUUCUCCGg -5'
14631 3' -53.6 NC_003521.1 + 193123 0.66 0.984525
Target:  5'- cGUGCGAAgUCGGaaGUGcagaGGGGAGGCUc -3'
miRNA:   3'- uCGUGCUUgAGCCg-CAC----UUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 161731 0.66 0.984525
Target:  5'- uGCGCGAGgUCaucgccaGCGUGggGGAGcugguGCCc -3'
miRNA:   3'- uCGUGCUUgAGc------CGCACuuUCUC-----CGG- -5'
14631 3' -53.6 NC_003521.1 + 109343 0.66 0.984525
Target:  5'- cGGCAgcAGC-CGGCGc--AGGAGGCCg -3'
miRNA:   3'- -UCGUgcUUGaGCCGCacuUUCUCCGG- -5'
14631 3' -53.6 NC_003521.1 + 16506 0.66 0.984525
Target:  5'- gAGCACGGGCUgCGGCGcucggcucgGcuGGAGcGCa -3'
miRNA:   3'- -UCGUGCUUGA-GCCGCa--------CuuUCUC-CGg -5'
14631 3' -53.6 NC_003521.1 + 49969 0.66 0.984525
Target:  5'- gAGgACGAGCggCGG-GUGGgucGAGGGaGCCg -3'
miRNA:   3'- -UCgUGCUUGa-GCCgCACU---UUCUC-CGG- -5'
14631 3' -53.6 NC_003521.1 + 224016 0.66 0.984525
Target:  5'- cAGCgGCGGGCcCGGCGgucgGGgcGGGcGCCg -3'
miRNA:   3'- -UCG-UGCUUGaGCCGCa---CUuuCUC-CGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.