miRNA display CGI


Results 81 - 100 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 142402 0.66 0.837199
Target:  5'- cGCGGCccuggcCGCCCuggccaacgucACCACcaGCgUCGGCACCa -3'
miRNA:   3'- -CGCUGa-----GCGGG-----------UGGUG--CG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 165496 0.66 0.85953
Target:  5'- -gGuACUCGCagcuCUGCGCCuCGGCGCCc -3'
miRNA:   3'- cgC-UGAGCGggu-GGUGCGG-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 122241 0.66 0.844814
Target:  5'- gGCGACUgaGCgCCGCCACGUCgCugGGCGuCUa -3'
miRNA:   3'- -CGCUGAg-CG-GGUGGUGCGG-G--UCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 28914 0.66 0.840265
Target:  5'- cGCGACuacaacgugcucuucUCuaugGCCacuaUACCACGCgCGGCGCCc -3'
miRNA:   3'- -CGCUG---------------AG----CGG----GUGGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 212388 0.66 0.860247
Target:  5'- gGCGACgaagagccacagcagCGguaCCGCCAgGCUCAGCAggcCCa -3'
miRNA:   3'- -CGCUGa--------------GCg--GGUGGUgCGGGUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 72673 0.66 0.85953
Target:  5'- gGCGGCgccccuauucCGCCCcguCCAC-CCaCGGCGCUg -3'
miRNA:   3'- -CGCUGa---------GCGGGu--GGUGcGG-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 87481 0.66 0.86662
Target:  5'- aGCGGCg-GCCgAagGUGCCCAGCACa -3'
miRNA:   3'- -CGCUGagCGGgUggUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 40815 0.66 0.85953
Target:  5'- aGCuAUUCGCCUcgggGCgGgGCCC-GCGCCa -3'
miRNA:   3'- -CGcUGAGCGGG----UGgUgCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 103488 0.66 0.86662
Target:  5'- uGCGGCacgCGCUgGCgAaagggcgaGCCCAGCAgCa -3'
miRNA:   3'- -CGCUGa--GCGGgUGgUg-------CGGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 31737 0.66 0.844814
Target:  5'- cGCGGCcacCGCCUccGCCGCcucgaCCGGCACa -3'
miRNA:   3'- -CGCUGa--GCGGG--UGGUGcg---GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 226376 0.66 0.86662
Target:  5'- gGCGGCUgaCG-CCGCCGCaggGCCguguGCACCa -3'
miRNA:   3'- -CGCUGA--GCgGGUGGUG---CGGgu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 22107 0.66 0.820683
Target:  5'- cGCuuCUCGCCCGCCGcCGCCgCcGUcuccuccGCCu -3'
miRNA:   3'- -CGcuGAGCGGGUGGU-GCGG-GuCG-------UGG- -5'
14631 5' -60.3 NC_003521.1 + 164587 0.66 0.86662
Target:  5'- gGCGAgaCaGUaaCCGCCACGCcaCCGGcCGCCg -3'
miRNA:   3'- -CGCUgaG-CG--GGUGGUGCG--GGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 184840 0.66 0.844814
Target:  5'- cGCuACUCGCgCCGCUGCGacugccgacCCCAGgCACa -3'
miRNA:   3'- -CGcUGAGCG-GGUGGUGC---------GGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 181920 0.66 0.85953
Target:  5'- -gGGCUC-CCaa-CGCGCCCAGgGCUa -3'
miRNA:   3'- cgCUGAGcGGgugGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 113977 0.66 0.844814
Target:  5'- gGCaGGCg-GCCgGCCGgGCaCCGGCugCa -3'
miRNA:   3'- -CG-CUGagCGGgUGGUgCG-GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 43555 0.66 0.837199
Target:  5'- --cGCUC-CCCGCCgccgGCGCCgcgucaAGCACCg -3'
miRNA:   3'- cgcUGAGcGGGUGG----UGCGGg-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 143034 0.66 0.858811
Target:  5'- cGCGGCUaGCaCCuuCCGCGaCCUggaugguggugguGGCGCCg -3'
miRNA:   3'- -CGCUGAgCG-GGu-GGUGC-GGG-------------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 53170 0.66 0.858811
Target:  5'- cGCGGC-CGCCCucGCCGaugaagaUGgCCAGCGgCg -3'
miRNA:   3'- -CGCUGaGCGGG--UGGU-------GCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 79 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.