miRNA display CGI


Results 101 - 120 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 120926 0.66 0.844814
Target:  5'- uGCGGCU-GCCCGCgGCGgcggcUCCGGCGa- -3'
miRNA:   3'- -CGCUGAgCGGGUGgUGC-----GGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 113977 0.66 0.844814
Target:  5'- gGCaGGCg-GCCgGCCGgGCaCCGGCugCa -3'
miRNA:   3'- -CG-CUGagCGGgUGGUgCG-GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 221089 0.66 0.844814
Target:  5'- cCGACgcCGUcaCCGCCACGCUgguCAGCAgCg -3'
miRNA:   3'- cGCUGa-GCG--GGUGGUGCGG---GUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 234757 0.66 0.844814
Target:  5'- aCGGCUgGCgUgAUCACGCCCuGCgggGCCg -3'
miRNA:   3'- cGCUGAgCG-GgUGGUGCGGGuCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 77596 0.66 0.844814
Target:  5'- cGUGGC-CGaaCCCACgucaccgggCGCGCCCgugacGGCGCCg -3'
miRNA:   3'- -CGCUGaGC--GGGUG---------GUGCGGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 79 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 149767 0.66 0.852259
Target:  5'- gGCGGC-CGCgCGgUACGCCuCAaCGCCa -3'
miRNA:   3'- -CGCUGaGCGgGUgGUGCGG-GUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 71881 0.66 0.852259
Target:  5'- uGCGGCUCuCCCAgUA-GCUCAGCAg- -3'
miRNA:   3'- -CGCUGAGcGGGUgGUgCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 143034 0.66 0.858811
Target:  5'- cGCGGCUaGCaCCuuCCGCGaCCUggaugguggugguGGCGCCg -3'
miRNA:   3'- -CGCUGAgCG-GGu-GGUGC-GGG-------------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 181920 0.66 0.85953
Target:  5'- -gGGCUC-CCaa-CGCGCCCAGgGCUa -3'
miRNA:   3'- cgCUGAGcGGgugGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 40815 0.66 0.85953
Target:  5'- aGCuAUUCGCCUcgggGCgGgGCCC-GCGCCa -3'
miRNA:   3'- -CGcUGAGCGGG----UGgUgCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 53170 0.66 0.858811
Target:  5'- cGCGGC-CGCCCucGCCGaugaagaUGgCCAGCGgCg -3'
miRNA:   3'- -CGCUGaGCGGG--UGGU-------GCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 103931 0.66 0.852259
Target:  5'- aCGuCgUUGUCgACCGCGaacaCCGGCGCCa -3'
miRNA:   3'- cGCuG-AGCGGgUGGUGCg---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 200378 0.66 0.819879
Target:  5'- cGCGACcgggcuagagcgCGCgagCACCugGCCgugguggaCAGCACCg -3'
miRNA:   3'- -CGCUGa-----------GCGg--GUGGugCGG--------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129911 0.66 0.85953
Target:  5'- gGCGGCcgcgCGCCugcugcgcgaaCACCugGCCgagaCGGCGCa -3'
miRNA:   3'- -CGCUGa---GCGG-----------GUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 149243 0.66 0.85953
Target:  5'- cGCGGCUacuaCGCCUacgacgugGCCAUGUCguuccgcguCGGCGCCc -3'
miRNA:   3'- -CGCUGA----GCGGG--------UGGUGCGG---------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225764 0.66 0.85953
Target:  5'- uGCaGCaCGCgCCGCuCGCGCUC-GCGCCg -3'
miRNA:   3'- -CGcUGaGCG-GGUG-GUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 219523 0.66 0.86662
Target:  5'- uUGACgaugaCCGCCACGCgCAGCcagACCg -3'
miRNA:   3'- cGCUGagcg-GGUGGUGCGgGUCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 71746 0.66 0.851522
Target:  5'- aGCGACUCGUUCACCuugagcACGUuaaacucuCCGacguggcGCGCCg -3'
miRNA:   3'- -CGCUGAGCGGGUGG------UGCG--------GGU-------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 232399 0.66 0.85953
Target:  5'- cGCuGGCUgCGCCUGCggCACGgcaacgCCAGCGCCu -3'
miRNA:   3'- -CG-CUGA-GCGGGUG--GUGCg-----GGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.