miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 217460 0.66 0.82942
Target:  5'- uGCGGgaagGCCagCACCAUGCCCAGaCACa -3'
miRNA:   3'- -CGCUgag-CGG--GUGGUGCGGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 226433 0.66 0.840265
Target:  5'- cGCGACaCGCCguagcgCGCCAgcuCGUccagguugugggccaCCAGCACCa -3'
miRNA:   3'- -CGCUGaGCGG------GUGGU---GCG---------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 122670 0.66 0.858811
Target:  5'- cGCGAUcgaggCGCCCAgCACcgacagcugcgggGCCggucgguugugCAGCGCCg -3'
miRNA:   3'- -CGCUGa----GCGGGUgGUG-------------CGG-----------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 72801 0.66 0.852259
Target:  5'- -aGACccgcaCGCCUACCAC-CaCCAGCAgCa -3'
miRNA:   3'- cgCUGa----GCGGGUGGUGcG-GGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 85716 0.66 0.852259
Target:  5'- -aGAa--GUCCuCCACGCCCugcuccugcAGCGCCg -3'
miRNA:   3'- cgCUgagCGGGuGGUGCGGG---------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 84090 0.66 0.837199
Target:  5'- gGCGGCaaagaccgaGCCCACgaaCAUGCgcuccuccccggCCAGCACCu -3'
miRNA:   3'- -CGCUGag-------CGGGUG---GUGCG------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 71881 0.66 0.852259
Target:  5'- uGCGGCUCuCCCAgUA-GCUCAGCAg- -3'
miRNA:   3'- -CGCUGAGcGGGUgGUgCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 122241 0.66 0.844814
Target:  5'- gGCGACUgaGCgCCGCCACGUCgCugGGCGuCUa -3'
miRNA:   3'- -CGCUGAg-CG-GGUGGUGCGG-G--UCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 31737 0.66 0.844814
Target:  5'- cGCGGCcacCGCCUccGCCGCcucgaCCGGCACa -3'
miRNA:   3'- -CGCUGa--GCGGG--UGGUGcg---GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 77596 0.66 0.844814
Target:  5'- cGUGGC-CGaaCCCACgucaccgggCGCGCCCgugacGGCGCCg -3'
miRNA:   3'- -CGCUGaGC--GGGUG---------GUGCGGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 79 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 234757 0.66 0.844814
Target:  5'- aCGGCUgGCgUgAUCACGCCCuGCgggGCCg -3'
miRNA:   3'- cGCUGAgCG-GgUGGUGCGGGuCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 221089 0.66 0.844814
Target:  5'- cCGACgcCGUcaCCGCCACGCUgguCAGCAgCg -3'
miRNA:   3'- cGCUGa-GCG--GGUGGUGCGG---GUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 54195 0.66 0.837199
Target:  5'- uCGACUUGCcgCCACCAcCGCCgc-CGCCg -3'
miRNA:   3'- cGCUGAGCG--GGUGGU-GCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 112940 0.66 0.837199
Target:  5'- --uACUaCGCCUACCGCGaCCCGcccgagauGCGCUa -3'
miRNA:   3'- cgcUGA-GCGGGUGGUGC-GGGU--------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 60711 0.66 0.852259
Target:  5'- gGCGGCgcggGUCgCACCACGCCgCuGC-CCu -3'
miRNA:   3'- -CGCUGag--CGG-GUGGUGCGG-GuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 240628 0.66 0.850044
Target:  5'- cGCGugUCGCUUGCCGCgggcgugcagggagGCCgaagCGGCgGCCg -3'
miRNA:   3'- -CGCugAGCGGGUGGUG--------------CGG----GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 153995 0.66 0.852259
Target:  5'- aGCuGCUUGCgCAgCACGCacgggucgcgCAGCACCu -3'
miRNA:   3'- -CGcUGAGCGgGUgGUGCGg---------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 139879 0.66 0.852259
Target:  5'- cGCGguacaGCUCGgUCAgCGCGUCCAGCuuCu -3'
miRNA:   3'- -CGC-----UGAGCgGGUgGUGCGGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 103931 0.66 0.852259
Target:  5'- aCGuCgUUGUCgACCGCGaacaCCGGCGCCa -3'
miRNA:   3'- cGCuG-AGCGGgUGGUGCg---GGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.