miRNA display CGI


Results 141 - 160 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 48159 0.66 0.852259
Target:  5'- uCGGCgaGCCCAagACGCCCaAGC-CCg -3'
miRNA:   3'- cGCUGagCGGGUggUGCGGG-UCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 23282 0.66 0.852259
Target:  5'- aGCGACgUGCaCCGCuuccuggucugCACGCgggucuaCAGCACCg -3'
miRNA:   3'- -CGCUGaGCG-GGUG-----------GUGCGg------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129911 0.66 0.85953
Target:  5'- gGCGGCcgcgCGCCugcugcgcgaaCACCugGCCgagaCGGCGCa -3'
miRNA:   3'- -CGCUGa---GCGG-----------GUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 117341 0.66 0.85953
Target:  5'- cGCuuucuuCUCGCUCAUCGgGgCCAGuCGCCa -3'
miRNA:   3'- -CGcu----GAGCGGGUGGUgCgGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 220373 0.66 0.85953
Target:  5'- uGCGAUUCugcgggaaGCCCAgCCAgaagacgcUGCCCAG-GCCg -3'
miRNA:   3'- -CGCUGAG--------CGGGU-GGU--------GCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 122241 0.66 0.844814
Target:  5'- gGCGACUgaGCgCCGCCACGUCgCugGGCGuCUa -3'
miRNA:   3'- -CGCUGAg-CG-GGUGGUGCGG-G--UCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 77596 0.66 0.844814
Target:  5'- cGUGGC-CGaaCCCACgucaccgggCGCGCCCgugacGGCGCCg -3'
miRNA:   3'- -CGCUGaGC--GGGUG---------GUGCGGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 53170 0.66 0.858811
Target:  5'- cGCGGC-CGCCCucGCCGaugaagaUGgCCAGCGgCg -3'
miRNA:   3'- -CGCUGaGCGGG--UGGU-------GCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 40815 0.66 0.85953
Target:  5'- aGCuAUUCGCCUcgggGCgGgGCCC-GCGCCa -3'
miRNA:   3'- -CGcUGAGCGGG----UGgUgCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 77945 0.66 0.85953
Target:  5'- aGCGGCcCaCCUGCgCGCGCCCcuGCGCg -3'
miRNA:   3'- -CGCUGaGcGGGUG-GUGCGGGu-CGUGg -5'
14631 5' -60.3 NC_003521.1 + 225764 0.66 0.85953
Target:  5'- uGCaGCaCGCgCCGCuCGCGCUC-GCGCCg -3'
miRNA:   3'- -CGcUGaGCG-GGUG-GUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 70621 0.66 0.844813
Target:  5'- aCGACcccUCGUgCCACUACcuccaCCGGCACCa -3'
miRNA:   3'- cGCUG---AGCG-GGUGGUGcg---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 44447 0.66 0.858811
Target:  5'- gGCGGCUCGgCgaugcgaguacaaCGCCACGCacuaCCuGCACg -3'
miRNA:   3'- -CGCUGAGCgG-------------GUGGUGCG----GGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 94423 0.66 0.858811
Target:  5'- cGCGGCg-GCCCAUgACGUCUcucagggGGuCGCCg -3'
miRNA:   3'- -CGCUGagCGGGUGgUGCGGG-------UC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 104763 0.66 0.852259
Target:  5'- -aGAUgagCGCgCAgCCGCuGCCCAGguCCa -3'
miRNA:   3'- cgCUGa--GCGgGU-GGUG-CGGGUCguGG- -5'
14631 5' -60.3 NC_003521.1 + 95791 0.66 0.844813
Target:  5'- uGCcGCUCGgCCA-CGCGaCCAGCGCg -3'
miRNA:   3'- -CGcUGAGCgGGUgGUGCgGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 174304 0.66 0.852259
Target:  5'- gGCGAuCUUGUCCAgCUGCGCcuugaaauCCAGC-CCg -3'
miRNA:   3'- -CGCU-GAGCGGGU-GGUGCG--------GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 176223 0.66 0.852259
Target:  5'- aGCGugUCGUCCcgcGCCA-GCCgCuuCACCa -3'
miRNA:   3'- -CGCugAGCGGG---UGGUgCGG-GucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 16090 0.66 0.837199
Target:  5'- cGCuGGC-CGCCUGCguCGgCgAGCACCa -3'
miRNA:   3'- -CG-CUGaGCGGGUGguGCgGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 240389 0.66 0.837199
Target:  5'- gGCuGGCUuacCGCCgGCUugGCCucgcCAGCACa -3'
miRNA:   3'- -CG-CUGA---GCGGgUGGugCGG----GUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.