miRNA display CGI


Results 81 - 100 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 207623 0.73 0.455493
Target:  5'- gGCGGCUCGCCgGCC-UGCaCCuuCACCu -3'
miRNA:   3'- -CGCUGAGCGGgUGGuGCG-GGucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 43653 0.73 0.446917
Target:  5'- cCGcCUCcaGCCCuGCCAgGCCCAGCGCg -3'
miRNA:   3'- cGCuGAG--CGGG-UGGUgCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 39275 0.73 0.481742
Target:  5'- cCGAUacaGCCgCGCCACGUcgCCGGCGCCg -3'
miRNA:   3'- cGCUGag-CGG-GUGGUGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 181467 0.73 0.467649
Target:  5'- aGCGGCUgGCgCGCCGCcugcagcguggcgugGCUCAGCACg -3'
miRNA:   3'- -CGCUGAgCGgGUGGUG---------------CGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 206879 0.73 0.481742
Target:  5'- aGCuGCUCG-CCGCgCACGCCgcacagCAGCACCa -3'
miRNA:   3'- -CGcUGAGCgGGUG-GUGCGG------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 212988 0.73 0.478199
Target:  5'- aGCGGCUCGCCCuggugaaACUggaucuguaccaugGCGCCgGGCgaGCCg -3'
miRNA:   3'- -CGCUGAGCGGG-------UGG--------------UGCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 150714 0.73 0.472909
Target:  5'- gGCGACUgGCUCucggccguggGCCACGUCCuGgGCCg -3'
miRNA:   3'- -CGCUGAgCGGG----------UGGUGCGGGuCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 87915 0.73 0.464159
Target:  5'- aCGACUCcuggcuGgCCGCCGCGCCgGGCAUg -3'
miRNA:   3'- cGCUGAG------CgGGUGGUGCGGgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 70882 0.72 0.508701
Target:  5'- aCGACauaUCGCCaCACCAgGgCCAGCAgCg -3'
miRNA:   3'- cGCUG---AGCGG-GUGGUgCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 69504 0.72 0.508701
Target:  5'- -aGACggCGCagGCCGCguugagGCCCAGCACCg -3'
miRNA:   3'- cgCUGa-GCGggUGGUG------CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 154582 0.72 0.499641
Target:  5'- cGCGAUUCucaaCCGCaCGCGCUCGGCGCa -3'
miRNA:   3'- -CGCUGAGcg--GGUG-GUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 73658 0.72 0.499641
Target:  5'- cGCGGC-CGCCU-CCaagACGCCCgaGGCGCCc -3'
miRNA:   3'- -CGCUGaGCGGGuGG---UGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 154939 0.72 0.508701
Target:  5'- uGCGACacgCGCCUcuACCgcgaGCGCCUGGUGCCc -3'
miRNA:   3'- -CGCUGa--GCGGG--UGG----UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 113746 0.72 0.508701
Target:  5'- -gGGC-CGCCUcucgucggugGCCcUGCCCGGCACCg -3'
miRNA:   3'- cgCUGaGCGGG----------UGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226833 0.72 0.508701
Target:  5'- gGgGucCUCGCCCgccGCCGCGCCgGGCAggcCCa -3'
miRNA:   3'- -CgCu-GAGCGGG---UGGUGCGGgUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 85660 0.72 0.51783
Target:  5'- cGCGGC-CGCCagcuguuccgaGCCgGCGUCCAGCACg -3'
miRNA:   3'- -CGCUGaGCGGg----------UGG-UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 135513 0.72 0.51783
Target:  5'- gGCGACgucgcgcggCGUCC-CCACGCCCGccaugaacGCGCUg -3'
miRNA:   3'- -CGCUGa--------GCGGGuGGUGCGGGU--------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226071 0.72 0.527023
Target:  5'- -aGGCgCGCCCcgGCCGCGgCCGGC-CCg -3'
miRNA:   3'- cgCUGaGCGGG--UGGUGCgGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 42442 0.72 0.527023
Target:  5'- aGUcGC-CGCCCGCCAcaacgcCGUCCGGCGCUa -3'
miRNA:   3'- -CGcUGaGCGGGUGGU------GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 57139 0.72 0.527023
Target:  5'- aGCGAuagguCUCGUCgGCCACGCgCGGCAg- -3'
miRNA:   3'- -CGCU-----GAGCGGgUGGUGCGgGUCGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.