miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 206368 0.72 0.508701
Target:  5'- uGCGGCgaCGaCCC-CCAgGCCCgcAGCGCCu -3'
miRNA:   3'- -CGCUGa-GC-GGGuGGUgCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226833 0.72 0.508701
Target:  5'- gGgGucCUCGCCCgccGCCGCGCCgGGCAggcCCa -3'
miRNA:   3'- -CgCu-GAGCGGG---UGGUGCGGgUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 154939 0.72 0.508701
Target:  5'- uGCGACacgCGCCUcuACCgcgaGCGCCUGGUGCCc -3'
miRNA:   3'- -CGCUGa--GCGGG--UGG----UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 135513 0.72 0.51783
Target:  5'- gGCGACgucgcgcggCGUCC-CCACGCCCGccaugaacGCGCUg -3'
miRNA:   3'- -CGCUGa--------GCGGGuGGUGCGGGU--------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 113746 0.72 0.508701
Target:  5'- -gGGC-CGCCUcucgucggugGCCcUGCCCGGCACCg -3'
miRNA:   3'- cgCUGaGCGGG----------UGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 70882 0.72 0.508701
Target:  5'- aCGACauaUCGCCaCACCAgGgCCAGCAgCg -3'
miRNA:   3'- cGCUG---AGCGG-GUGGUgCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 69504 0.72 0.508701
Target:  5'- -aGACggCGCagGCCGCguugagGCCCAGCACCg -3'
miRNA:   3'- cgCUGa-GCGggUGGUG------CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69868 0.71 0.545586
Target:  5'- -aGGC-CGCCgcgcagCGCCACGCCCAG-GCCa -3'
miRNA:   3'- cgCUGaGCGG------GUGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 73621 0.71 0.545586
Target:  5'- uGCGGCgCGCCUGCCA-GCCCAaGCAg- -3'
miRNA:   3'- -CGCUGaGCGGGUGGUgCGGGU-CGUgg -5'
14631 5' -60.3 NC_003521.1 + 134904 0.71 0.583288
Target:  5'- aUGAuCUCGUCCAUgaagGCGCCCGGCAUg -3'
miRNA:   3'- cGCU-GAGCGGGUGg---UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 147757 0.71 0.596617
Target:  5'- aGC-ACagGCCCaugGCCACcaccacgguguugaaGCCCAGCGCCa -3'
miRNA:   3'- -CGcUGagCGGG---UGGUG---------------CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 83770 0.71 0.583288
Target:  5'- gGUGGCggCGCCCcccGCCGCGCuCCuccgaccGCGCCc -3'
miRNA:   3'- -CGCUGa-GCGGG---UGGUGCG-GGu------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 58939 0.71 0.583288
Target:  5'- uGCGcCUCGaacuCCACCAgGCCCucuGGCGCg -3'
miRNA:   3'- -CGCuGAGCg---GGUGGUgCGGG---UCGUGg -5'
14631 5' -60.3 NC_003521.1 + 131187 0.71 0.583288
Target:  5'- cGCGucucaugUUCGCCCGCUACgGCgagaggggCCGGCGCCa -3'
miRNA:   3'- -CGCu------GAGCGGGUGGUG-CG--------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 78583 0.71 0.573803
Target:  5'- uUGA--CGCCCACCcCG-CCAGCGCCg -3'
miRNA:   3'- cGCUgaGCGGGUGGuGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 111335 0.71 0.587091
Target:  5'- aCGugUccCGCUCGCCAUGuccuucuccucggauCCCGGCGCCg -3'
miRNA:   3'- cGCugA--GCGGGUGGUGC---------------GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 125418 0.71 0.592804
Target:  5'- aGCGGgaugauCUCGCCCACCACGU--AGUugCc -3'
miRNA:   3'- -CGCU------GAGCGGGUGGUGCGggUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 20699 0.71 0.592804
Target:  5'- aGCGAacCGCCCGCCAa-CCUGGCGCg -3'
miRNA:   3'- -CGCUgaGCGGGUGGUgcGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 31880 0.71 0.592804
Target:  5'- aGCGguAC-CGCaCCGCCAgGCCgCGGCACa -3'
miRNA:   3'- -CGC--UGaGCG-GGUGGUgCGG-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 145731 0.71 0.573803
Target:  5'- cGCGGC-CGCUCAagGCGCCCgAGCcCCu -3'
miRNA:   3'- -CGCUGaGCGGGUggUGCGGG-UCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.