miRNA display CGI


Results 81 - 100 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 181467 0.73 0.467649
Target:  5'- aGCGGCUgGCgCGCCGCcugcagcguggcgugGCUCAGCACg -3'
miRNA:   3'- -CGCUGAgCGgGUGGUG---------------CGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 93931 0.73 0.472909
Target:  5'- gGCGACUaccgcUGCCCGCCGuCGUCUGGCuuCCu -3'
miRNA:   3'- -CGCUGA-----GCGGGUGGU-GCGGGUCGu-GG- -5'
14631 5' -60.3 NC_003521.1 + 174835 0.73 0.472909
Target:  5'- aGCGACUuggUGUCCggcgugGCCACGUCCAGCcauuCCa -3'
miRNA:   3'- -CGCUGA---GCGGG------UGGUGCGGGUCGu---GG- -5'
14631 5' -60.3 NC_003521.1 + 150714 0.73 0.472909
Target:  5'- gGCGACUgGCUCucggccguggGCCACGUCCuGgGCCg -3'
miRNA:   3'- -CGCUGAgCGGG----------UGGUGCGGGuCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 212988 0.73 0.478199
Target:  5'- aGCGGCUCGCCCuggugaaACUggaucuguaccaugGCGCCgGGCgaGCCg -3'
miRNA:   3'- -CGCUGAGCGGG-------UGG--------------UGCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 48358 0.73 0.481742
Target:  5'- cCGAC-CGCCguCCugGaaaCCGGCGCCg -3'
miRNA:   3'- cGCUGaGCGGguGGugCg--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206879 0.73 0.481742
Target:  5'- aGCuGCUCG-CCGCgCACGCCgcacagCAGCACCa -3'
miRNA:   3'- -CGcUGAGCgGGUG-GUGCGG------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 39275 0.73 0.481742
Target:  5'- cCGAUacaGCCgCGCCACGUcgCCGGCGCCg -3'
miRNA:   3'- cGCUGag-CGG-GUGGUGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 103284 0.72 0.490654
Target:  5'- gGCGccguCUCGUcguaggCCACCACGCgCCGGUACUc -3'
miRNA:   3'- -CGCu---GAGCG------GGUGGUGCG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 53212 0.72 0.490654
Target:  5'- cCGGCUCGCCCuggcagGCCGUGCCCAccgGCAgCa -3'
miRNA:   3'- cGCUGAGCGGG------UGGUGCGGGU---CGUgG- -5'
14631 5' -60.3 NC_003521.1 + 28757 0.72 0.490654
Target:  5'- cGCgGGC-CGCgCCACCGC-CCUAGCGCUg -3'
miRNA:   3'- -CG-CUGaGCG-GGUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 152773 0.72 0.490654
Target:  5'- aCGGCgUCGCCUcCUGCGCCUugcGCACCg -3'
miRNA:   3'- cGCUG-AGCGGGuGGUGCGGGu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 171564 0.72 0.49424
Target:  5'- -aGAC-CGCUUGCCACGUcggccaccaucaucaCCAGCACCa -3'
miRNA:   3'- cgCUGaGCGGGUGGUGCG---------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 26937 0.72 0.496037
Target:  5'- cGCGACUCGCCuucuccuCACUcuugggugccauggACGCCCuGCAgCg -3'
miRNA:   3'- -CGCUGAGCGG-------GUGG--------------UGCGGGuCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 165997 0.72 0.499641
Target:  5'- cGCGGgaCGCCgu-CGCGCUCGGCGCCg -3'
miRNA:   3'- -CGCUgaGCGGgugGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 73658 0.72 0.499641
Target:  5'- cGCGGC-CGCCU-CCaagACGCCCgaGGCGCCc -3'
miRNA:   3'- -CGCUGaGCGGGuGG---UGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69166 0.72 0.499641
Target:  5'- cCGACgcucccgaCGCCCGCCGCGgCC-GCGCUa -3'
miRNA:   3'- cGCUGa-------GCGGGUGGUGCgGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 154582 0.72 0.499641
Target:  5'- cGCGAUUCucaaCCGCaCGCGCUCGGCGCa -3'
miRNA:   3'- -CGCUGAGcg--GGUG-GUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 121336 0.72 0.507792
Target:  5'- gGCGACaacggcuUCaCCCugCACGCCCcGCGCg -3'
miRNA:   3'- -CGCUG-------AGcGGGugGUGCGGGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 69504 0.72 0.508701
Target:  5'- -aGACggCGCagGCCGCguugagGCCCAGCACCg -3'
miRNA:   3'- cgCUGa-GCGggUGGUG------CGGGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.