miRNA display CGI


Results 101 - 120 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 113746 0.72 0.508701
Target:  5'- -gGGC-CGCCUcucgucggugGCCcUGCCCGGCACCg -3'
miRNA:   3'- cgCUGaGCGGG----------UGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 70882 0.72 0.508701
Target:  5'- aCGACauaUCGCCaCACCAgGgCCAGCAgCg -3'
miRNA:   3'- cGCUG---AGCGG-GUGGUgCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 154939 0.72 0.508701
Target:  5'- uGCGACacgCGCCUcuACCgcgaGCGCCUGGUGCCc -3'
miRNA:   3'- -CGCUGa--GCGGG--UGG----UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69504 0.72 0.508701
Target:  5'- -aGACggCGCagGCCGCguugagGCCCAGCACCg -3'
miRNA:   3'- cgCUGa-GCGggUGGUG------CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206368 0.72 0.508701
Target:  5'- uGCGGCgaCGaCCC-CCAgGCCCgcAGCGCCu -3'
miRNA:   3'- -CGCUGa-GC-GGGuGGUgCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 138805 0.72 0.508701
Target:  5'- cGUGGCccaggUGCUCAaCCACGCCCuGUGCCu -3'
miRNA:   3'- -CGCUGa----GCGGGU-GGUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 47610 0.72 0.508701
Target:  5'- cCGACUUGgCCGCCAuCGUCCAGgCgGCCg -3'
miRNA:   3'- cGCUGAGCgGGUGGU-GCGGGUC-G-UGG- -5'
14631 5' -60.3 NC_003521.1 + 115360 0.72 0.51783
Target:  5'- gGCGGCgcgggcgCGUUCGCCACGUCCGagacGCACUu -3'
miRNA:   3'- -CGCUGa------GCGGGUGGUGCGGGU----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 211963 0.72 0.51783
Target:  5'- gGCGACUCGaCCgUGCCGCGCCgCcGCAgCu -3'
miRNA:   3'- -CGCUGAGC-GG-GUGGUGCGG-GuCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 85660 0.72 0.51783
Target:  5'- cGCGGC-CGCCagcuguuccgaGCCgGCGUCCAGCACg -3'
miRNA:   3'- -CGCUGaGCGGg----------UGG-UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 135513 0.72 0.51783
Target:  5'- gGCGACgucgcgcggCGUCC-CCACGCCCGccaugaacGCGCUg -3'
miRNA:   3'- -CGCUGa--------GCGGGuGGUGCGGGU--------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 96547 0.72 0.51783
Target:  5'- aGCGAgUCGCCgUGCU-CGCCCAGCAg- -3'
miRNA:   3'- -CGCUgAGCGG-GUGGuGCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 208624 0.72 0.526101
Target:  5'- uGCGAgccaUC-CCCACCAUGCCCgacccgcAGCACUu -3'
miRNA:   3'- -CGCUg---AGcGGGUGGUGCGGG-------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 111659 0.72 0.527023
Target:  5'- aGCGAgaagUCGCCCAUCACcauccccuucgaGCUgAGCGCCg -3'
miRNA:   3'- -CGCUg---AGCGGGUGGUG------------CGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 42442 0.72 0.527023
Target:  5'- aGUcGC-CGCCCGCCAcaacgcCGUCCGGCGCUa -3'
miRNA:   3'- -CGcUGaGCGGGUGGU------GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 197591 0.72 0.527023
Target:  5'- uGCuACUCGCCCuucCCGCuGCCCGGUAa- -3'
miRNA:   3'- -CGcUGAGCGGGu--GGUG-CGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 121009 0.72 0.527023
Target:  5'- uGgGGCgugCGCaCCACCGuguCGCCCcgcuGGCGCCg -3'
miRNA:   3'- -CgCUGa--GCG-GGUGGU---GCGGG----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29155 0.72 0.527023
Target:  5'- cGCGGCaacuUC-UCCGCCAaagGCCCGGUACCg -3'
miRNA:   3'- -CGCUG----AGcGGGUGGUg--CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226071 0.72 0.527023
Target:  5'- -aGGCgCGCCCcgGCCGCGgCCGGC-CCg -3'
miRNA:   3'- cgCUGaGCGGG--UGGUGCgGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 57139 0.72 0.527023
Target:  5'- aGCGAuagguCUCGUCgGCCACGCgCGGCAg- -3'
miRNA:   3'- -CGCU-----GAGCGGgUGGUGCGgGUCGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.