miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 121009 0.72 0.527023
Target:  5'- uGgGGCgugCGCaCCACCGuguCGCCCcgcuGGCGCCg -3'
miRNA:   3'- -CgCUGa--GCG-GGUGGU---GCGGG----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137675 0.72 0.533494
Target:  5'- cGCGACgagaucCGCCUggugcugcagcaccGCCGCGCgCuGCGCCa -3'
miRNA:   3'- -CGCUGa-----GCGGG--------------UGGUGCGgGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 18907 0.72 0.536276
Target:  5'- cGCGGCa-GCCCcgaaggguggcGCCGCGCgCCGGCAauCCg -3'
miRNA:   3'- -CGCUGagCGGG-----------UGGUGCG-GGUCGU--GG- -5'
14631 5' -60.3 NC_003521.1 + 167050 0.72 0.536276
Target:  5'- aGCGGCguggCGCUCAUgACG-CCGGUGCCg -3'
miRNA:   3'- -CGCUGa---GCGGGUGgUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 113812 0.72 0.536276
Target:  5'- gGCGGCgUCGUcgggcaCCGCCACGUCgGGCAgCg -3'
miRNA:   3'- -CGCUG-AGCG------GGUGGUGCGGgUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 195533 0.72 0.536276
Target:  5'- cCGGCUCcugGCCCAgCgGCGCCCGGU-CCa -3'
miRNA:   3'- cGCUGAG---CGGGU-GgUGCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 126931 0.72 0.536276
Target:  5'- aGCaGCUCGCCUACCugcuguCGCUguGcCGCCg -3'
miRNA:   3'- -CGcUGAGCGGGUGGu-----GCGGguC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 14746 0.71 0.545586
Target:  5'- cGUGACggGCCgGCCGCGgCCGgggcGCGCCu -3'
miRNA:   3'- -CGCUGagCGGgUGGUGCgGGU----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 140574 0.71 0.545586
Target:  5'- gGCGACagcucgUCGUCgggCACCuCGCCCAGCuCCa -3'
miRNA:   3'- -CGCUG------AGCGG---GUGGuGCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 134699 0.71 0.545586
Target:  5'- gGUGGCgguaggUGCCCacggccGCCACGCCCuGC-CCg -3'
miRNA:   3'- -CGCUGa-----GCGGG------UGGUGCGGGuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 196500 0.71 0.545586
Target:  5'- uGCaGCUUGCCCAgCACcuGCuUCAGCACCc -3'
miRNA:   3'- -CGcUGAGCGGGUgGUG--CG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69868 0.71 0.545586
Target:  5'- -aGGC-CGCCgcgcagCGCCACGCCCAG-GCCa -3'
miRNA:   3'- cgCUGaGCGG------GUGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 73621 0.71 0.545586
Target:  5'- uGCGGCgCGCCUGCCA-GCCCAaGCAg- -3'
miRNA:   3'- -CGCUGaGCGGGUGGUgCGGGU-CGUgg -5'
14631 5' -60.3 NC_003521.1 + 139638 0.71 0.545586
Target:  5'- -aGAUcCGCCCGCCGgGCgCGGaCGCCg -3'
miRNA:   3'- cgCUGaGCGGGUGGUgCGgGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 118936 0.71 0.554947
Target:  5'- gGCGGCggCGuCCCGUCAgGgCCAGCGCCc -3'
miRNA:   3'- -CGCUGa-GC-GGGUGGUgCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 99958 0.71 0.554947
Target:  5'- gGCGGCggCGCCUcgGCCgagaccgcgaaGCGCuCCAGCACg -3'
miRNA:   3'- -CGCUGa-GCGGG--UGG-----------UGCG-GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 74612 0.71 0.554947
Target:  5'- cGCGcCUCG-CCGCCGCGCCaaCAGCGg- -3'
miRNA:   3'- -CGCuGAGCgGGUGGUGCGG--GUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 12588 0.71 0.554947
Target:  5'- gGCGGCa--CCCACCACGaCCAGCguACCu -3'
miRNA:   3'- -CGCUGagcGGGUGGUGCgGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 166468 0.71 0.554947
Target:  5'- cGC-ACUgGCCguaGCCGCGCagCAGCGCCa -3'
miRNA:   3'- -CGcUGAgCGGg--UGGUGCGg-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 202653 0.71 0.554947
Target:  5'- aGCGGC---CCCGCUgggACGCCCuGCACCu -3'
miRNA:   3'- -CGCUGagcGGGUGG---UGCGGGuCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.