miRNA display CGI


Results 141 - 160 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 148826 0.71 0.561527
Target:  5'- gGCGAC-CGCCUGCCcucggccgaggugcGUGCCguGCACCg -3'
miRNA:   3'- -CGCUGaGCGGGUGG--------------UGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 146913 0.71 0.564354
Target:  5'- cGCcGCUUGCCgcgaccaGCCACGCCCAuGC-CCu -3'
miRNA:   3'- -CGcUGAGCGGg------UGGUGCGGGU-CGuGG- -5'
14631 5' -60.3 NC_003521.1 + 194537 0.71 0.564354
Target:  5'- uGCGAUcgaacUGUCUGCCGCGUCgGGCGCCu -3'
miRNA:   3'- -CGCUGa----GCGGGUGGUGCGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 68041 0.71 0.564354
Target:  5'- gGCGGCgUgGUCCGCgGCGCCCccgguGGCAgCCa -3'
miRNA:   3'- -CGCUG-AgCGGGUGgUGCGGG-----UCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 154567 0.71 0.564354
Target:  5'- uCGcCUCGCCgGCCGacuuCGCCCuGCACg -3'
miRNA:   3'- cGCuGAGCGGgUGGU----GCGGGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 64190 0.71 0.570964
Target:  5'- cGCGACUgcgucagcaguaccUGCUgGCCACGCagCAGCGCg -3'
miRNA:   3'- -CGCUGA--------------GCGGgUGGUGCGg-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 137758 0.71 0.572856
Target:  5'- aGCc-CUCGCCCGCgCAccCGCCCugucugcAGCACCu -3'
miRNA:   3'- -CGcuGAGCGGGUG-GU--GCGGG-------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 210547 0.71 0.573803
Target:  5'- aCGACguggagcgCGCCCGCCAgGgUCAGCugGCCa -3'
miRNA:   3'- cGCUGa-------GCGGGUGGUgCgGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 124983 0.71 0.573803
Target:  5'- uGCG-C-CGCCCGCCugaG-CCAGCGCCu -3'
miRNA:   3'- -CGCuGaGCGGGUGGug-CgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 90038 0.71 0.573803
Target:  5'- gGCGGCUcgCGCCCGCCcgucguCGCgCgAGCGCa -3'
miRNA:   3'- -CGCUGA--GCGGGUGGu-----GCG-GgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 102772 0.71 0.573803
Target:  5'- cGCGGCggUCGCgggcgaC-CCACGCCCcguGCGCCg -3'
miRNA:   3'- -CGCUG--AGCGg-----GuGGUGCGGGu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 71890 0.71 0.573803
Target:  5'- aGCGGCg-GCCCugCcuGCGCCCuccucGCAUCa -3'
miRNA:   3'- -CGCUGagCGGGugG--UGCGGGu----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 123811 0.71 0.573803
Target:  5'- aCGACUCGCgcuCCGUCACGCcgaCCAGCugCu -3'
miRNA:   3'- cGCUGAGCG---GGUGGUGCG---GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 125435 0.71 0.573803
Target:  5'- gGCGGC-CGCCC---GCGCCCuGCACa -3'
miRNA:   3'- -CGCUGaGCGGGuggUGCGGGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 170724 0.71 0.573803
Target:  5'- gGCGGCaCGCCgGCCAggUGCCCuGCGgCa -3'
miRNA:   3'- -CGCUGaGCGGgUGGU--GCGGGuCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 145731 0.71 0.573803
Target:  5'- cGCGGC-CGCUCAagGCGCCCgAGCcCCu -3'
miRNA:   3'- -CGCUGaGCGGGUggUGCGGG-UCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 78583 0.71 0.573803
Target:  5'- uUGA--CGCCCACCcCG-CCAGCGCCg -3'
miRNA:   3'- cGCUgaGCGGGUGGuGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 214529 0.71 0.573803
Target:  5'- uCGG--UGCCCuCCAagaUGCCCAGCACCa -3'
miRNA:   3'- cGCUgaGCGGGuGGU---GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 176448 0.71 0.577593
Target:  5'- uGCaGACgCGCCCgcACCucgggcauguccaggGCGCCCAGgGCCu -3'
miRNA:   3'- -CG-CUGaGCGGG--UGG---------------UGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 83770 0.71 0.583288
Target:  5'- gGUGGCggCGCCCcccGCCGCGCuCCuccgaccGCGCCc -3'
miRNA:   3'- -CGCUGa-GCGGG---UGGUGCG-GGu------CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.