miRNA display CGI


Results 161 - 180 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 140958 0.71 0.583288
Target:  5'- -aGACggUGgCCGCCAUGCgCCAGCugCu -3'
miRNA:   3'- cgCUGa-GCgGGUGGUGCG-GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 58939 0.71 0.583288
Target:  5'- uGCGcCUCGaacuCCACCAgGCCCucuGGCGCg -3'
miRNA:   3'- -CGCuGAGCg---GGUGGUgCGGG---UCGUGg -5'
14631 5' -60.3 NC_003521.1 + 83770 0.71 0.583288
Target:  5'- gGUGGCggCGCCCcccGCCGCGCuCCuccgaccGCGCCc -3'
miRNA:   3'- -CGCUGa-GCGGG---UGGUGCG-GGu------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 134904 0.71 0.583288
Target:  5'- aUGAuCUCGUCCAUgaagGCGCCCGGCAUg -3'
miRNA:   3'- cGCU-GAGCGGGUGg---UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 131187 0.71 0.583288
Target:  5'- cGCGucucaugUUCGCCCGCUACgGCgagaggggCCGGCGCCa -3'
miRNA:   3'- -CGCu------GAGCGGGUGGUG-CG--------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 100621 0.71 0.583288
Target:  5'- gGCGACUCGgCCGCCAagauCCaggAGCGCUa -3'
miRNA:   3'- -CGCUGAGCgGGUGGUgc--GGg--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 205173 0.71 0.583288
Target:  5'- uCGAgCUCGCCUGCCGCuCgCAGCGCg -3'
miRNA:   3'- cGCU-GAGCGGGUGGUGcGgGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 139182 0.71 0.583288
Target:  5'- cGCG-CUCGCUgAacgugaCGCGCuaCCAGCGCCg -3'
miRNA:   3'- -CGCuGAGCGGgUg-----GUGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 95221 0.71 0.587091
Target:  5'- uGCGACUgcagcagcgaggccaCGgCCGCCGCGUCguGcCGCCg -3'
miRNA:   3'- -CGCUGA---------------GCgGGUGGUGCGGguC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 111335 0.71 0.587091
Target:  5'- aCGugUccCGCUCGCCAUGuccuucuccucggauCCCGGCGCCg -3'
miRNA:   3'- cGCugA--GCGGGUGGUGC---------------GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 95390 0.71 0.592804
Target:  5'- aGC-ACagGUCCACCgagGCGCCCAGCAagcCCg -3'
miRNA:   3'- -CGcUGagCGGGUGG---UGCGGGUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 82854 0.71 0.592804
Target:  5'- gGCGGCgUCGCUaccagCGCCGucguCGCCCAGCcucagGCCa -3'
miRNA:   3'- -CGCUG-AGCGG-----GUGGU----GCGGGUCG-----UGG- -5'
14631 5' -60.3 NC_003521.1 + 115717 0.71 0.592804
Target:  5'- gGCGGCcguggUGCCCAUCccgcaGCGCCU-GCACCu -3'
miRNA:   3'- -CGCUGa----GCGGGUGG-----UGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 14542 0.71 0.592804
Target:  5'- -gGGCUCGUaCGCCACgGCCgAGCGCa -3'
miRNA:   3'- cgCUGAGCGgGUGGUG-CGGgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 31880 0.71 0.592804
Target:  5'- aGCGguAC-CGCaCCGCCAgGCCgCGGCACa -3'
miRNA:   3'- -CGC--UGaGCG-GGUGGUgCGG-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 20699 0.71 0.592804
Target:  5'- aGCGAacCGCCCGCCAa-CCUGGCGCg -3'
miRNA:   3'- -CGCUgaGCGGGUGGUgcGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 125418 0.71 0.592804
Target:  5'- aGCGGgaugauCUCGCCCACCACGU--AGUugCc -3'
miRNA:   3'- -CGCU------GAGCGGGUGGUGCGggUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 147757 0.71 0.596617
Target:  5'- aGC-ACagGCCCaugGCCACcaccacgguguugaaGCCCAGCGCCa -3'
miRNA:   3'- -CGcUGagCGGG---UGGUG---------------CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 44759 0.7 0.602345
Target:  5'- cGCGccaguccacCUCGCCgGCCuucCGCCCGGUGCUc -3'
miRNA:   3'- -CGCu--------GAGCGGgUGGu--GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 128452 0.7 0.602345
Target:  5'- aGCG-CUCGCCCAggcggaUCACGUCCAuggGCAgCg -3'
miRNA:   3'- -CGCuGAGCGGGU------GGUGCGGGU---CGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.