miRNA display CGI


Results 101 - 120 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 120926 0.66 0.844814
Target:  5'- uGCGGCU-GCCCGCgGCGgcggcUCCGGCGa- -3'
miRNA:   3'- -CGCUGAgCGGGUGgUGC-----GGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 234757 0.66 0.844814
Target:  5'- aCGGCUgGCgUgAUCACGCCCuGCgggGCCg -3'
miRNA:   3'- cGCUGAgCG-GgUGGUGCGGGuCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 77596 0.66 0.844814
Target:  5'- cGUGGC-CGaaCCCACgucaccgggCGCGCCCgugacGGCGCCg -3'
miRNA:   3'- -CGCUGaGC--GGGUG---------GUGCGGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 113977 0.66 0.844814
Target:  5'- gGCaGGCg-GCCgGCCGgGCaCCGGCugCa -3'
miRNA:   3'- -CG-CUGagCGGgUGGUgCG-GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 184840 0.66 0.844814
Target:  5'- cGCuACUCGCgCCGCUGCGacugccgacCCCAGgCACa -3'
miRNA:   3'- -CGcUGAGCG-GGUGGUGC---------GGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 31737 0.66 0.844814
Target:  5'- cGCGGCcacCGCCUccGCCGCcucgaCCGGCACa -3'
miRNA:   3'- -CGCUGa--GCGGG--UGGUGcg---GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 122241 0.66 0.844814
Target:  5'- gGCGACUgaGCgCCGCCACGUCgCugGGCGuCUa -3'
miRNA:   3'- -CGCUGAg-CG-GGUGGUGCGG-G--UCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 149305 0.66 0.844813
Target:  5'- uCGACgcucCGCCCACCuccauUGCCUguuguuGGUGCCc -3'
miRNA:   3'- cGCUGa---GCGGGUGGu----GCGGG------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 95791 0.66 0.844813
Target:  5'- uGCcGCUCGgCCA-CGCGaCCAGCGCg -3'
miRNA:   3'- -CGcUGAGCgGGUgGUGCgGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 52767 0.66 0.844813
Target:  5'- aGCGGCUCuaCCGCgGCaucgacaaCCCGcuGCACCg -3'
miRNA:   3'- -CGCUGAGcgGGUGgUGc-------GGGU--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 34103 0.66 0.844813
Target:  5'- cGCGAUaggaGCCCGCC--GCCC-GCACg -3'
miRNA:   3'- -CGCUGag--CGGGUGGugCGGGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 163838 0.66 0.844813
Target:  5'- cGUGcCU-GCCCAUCGC-CgCCAGCAUCa -3'
miRNA:   3'- -CGCuGAgCGGGUGGUGcG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 220890 0.66 0.844813
Target:  5'- -aGGCUucCGCCUucugcuGCgGCGUCCAGgACCa -3'
miRNA:   3'- cgCUGA--GCGGG------UGgUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 33327 0.66 0.844813
Target:  5'- --uGCUgGCaCCACC-CGCUgggCGGCACCg -3'
miRNA:   3'- cgcUGAgCG-GGUGGuGCGG---GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 70621 0.66 0.844813
Target:  5'- aCGACcccUCGUgCCACUACcuccaCCGGCACCa -3'
miRNA:   3'- cGCUG---AGCG-GGUGGUGcg---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 116723 0.66 0.844813
Target:  5'- aGCGACgCGCUgcuuCC-CGCCCA-CGCCg -3'
miRNA:   3'- -CGCUGaGCGGgu--GGuGCGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 218401 0.66 0.84406
Target:  5'- gGCGguACUCgGCCaCGCCGCGCagcauggCCAGCGa- -3'
miRNA:   3'- -CGC--UGAG-CGG-GUGGUGCG-------GGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 222230 0.66 0.842547
Target:  5'- cGCGGCUgGgCCGCaggaaccagucgagCGCGCucuCCAGCugCg -3'
miRNA:   3'- -CGCUGAgCgGGUG--------------GUGCG---GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 226433 0.66 0.840265
Target:  5'- cGCGACaCGCCguagcgCGCCAgcuCGUccagguugugggccaCCAGCACCa -3'
miRNA:   3'- -CGCUGaGCGG------GUGGU---GCG---------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 28914 0.66 0.840265
Target:  5'- cGCGACuacaacgugcucuucUCuaugGCCacuaUACCACGCgCGGCGCCc -3'
miRNA:   3'- -CGCUG---------------AG----CGG----GUGGUGCGgGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.