miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 211147 0.66 0.840265
Target:  5'- gGCGGCUCgGUCCauaaaggcuuugagaGCCAgCGCCCGGaGCg -3'
miRNA:   3'- -CGCUGAG-CGGG---------------UGGU-GCGGGUCgUGg -5'
14631 5' -60.3 NC_003521.1 + 239890 0.66 0.837199
Target:  5'- aUGGCUCGgCUggugguguuaGCCaugaACGCCguGCGCCa -3'
miRNA:   3'- cGCUGAGCgGG----------UGG----UGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 39663 0.66 0.837199
Target:  5'- aUGGCUCGgCUggugguguuaGCCaugaACGCCguGCGCCa -3'
miRNA:   3'- cGCUGAGCgGG----------UGG----UGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 49198 0.66 0.837199
Target:  5'- --cGCUCGCuUCGCCGCGCaCAGCAa- -3'
miRNA:   3'- cgcUGAGCG-GGUGGUGCGgGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 164913 0.66 0.837199
Target:  5'- cGCGAgcacaacgUGCCCAuCCACGCCgacaAGUACUu -3'
miRNA:   3'- -CGCUga------GCGGGU-GGUGCGGg---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137331 0.66 0.837199
Target:  5'- -gGGCUCGCCCuuucGCCAgcgcgUGCCgCAGUucgucGCCu -3'
miRNA:   3'- cgCUGAGCGGG----UGGU-----GCGG-GUCG-----UGG- -5'
14631 5' -60.3 NC_003521.1 + 137376 0.66 0.837199
Target:  5'- cGUGGCgCGCaaCCGCCGCGaCCUGGCGg- -3'
miRNA:   3'- -CGCUGaGCG--GGUGGUGC-GGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 100259 0.66 0.837199
Target:  5'- aCGACgagcugUCGCC-GCCGcCGCCgCAGCAgCCa -3'
miRNA:   3'- cGCUG------AGCGGgUGGU-GCGG-GUCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 142402 0.66 0.837199
Target:  5'- cGCGGCccuggcCGCCCuggccaacgucACCACcaGCgUCGGCACCa -3'
miRNA:   3'- -CGCUGa-----GCGGG-----------UGGUG--CG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 200067 0.66 0.837199
Target:  5'- gGCuGGCUuacCGCCgGCUugGCCucgcCAGCACa -3'
miRNA:   3'- -CG-CUGA---GCGGgUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 99952 0.66 0.837199
Target:  5'- aGCGuCUCGUCgAUgAUGgCCAGCAgCg -3'
miRNA:   3'- -CGCuGAGCGGgUGgUGCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 16090 0.66 0.837199
Target:  5'- cGCuGGC-CGCCUGCguCGgCgAGCACCa -3'
miRNA:   3'- -CG-CUGaGCGGGUGguGCgGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 54195 0.66 0.837199
Target:  5'- uCGACUUGCcgCCACCAcCGCCgc-CGCCg -3'
miRNA:   3'- cGCUGAGCG--GGUGGU-GCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 112940 0.66 0.837199
Target:  5'- --uACUaCGCCUACCGCGaCCCGcccgagauGCGCUa -3'
miRNA:   3'- cgcUGA-GCGGGUGGUGC-GGGU--------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 84090 0.66 0.837199
Target:  5'- gGCGGCaaagaccgaGCCCACgaaCAUGCgcuccuccccggCCAGCACCu -3'
miRNA:   3'- -CGCUGag-------CGGGUG---GUGCG------------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 56671 0.66 0.837199
Target:  5'- --cGCUCGCgCACCAggucgcaguagcCGCCCAGgCAgCg -3'
miRNA:   3'- cgcUGAGCGgGUGGU------------GCGGGUC-GUgG- -5'
14631 5' -60.3 NC_003521.1 + 223593 0.66 0.837199
Target:  5'- cCGGCUCGCUugccaUACCGCGCgaCGGCGa- -3'
miRNA:   3'- cGCUGAGCGG-----GUGGUGCGg-GUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 118056 0.66 0.837199
Target:  5'- uGCu-CUCGgCCGCCAuccccgUGCCCGGUgucaGCCa -3'
miRNA:   3'- -CGcuGAGCgGGUGGU------GCGGGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 120235 0.66 0.837199
Target:  5'- cCGGCaggaGCCggcgGCCGCGCCguGCAUCg -3'
miRNA:   3'- cGCUGag--CGGg---UGGUGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 120044 0.66 0.837199
Target:  5'- cCGGCcgUGUUCACCugGCCCcaguGGCagGCCg -3'
miRNA:   3'- cGCUGa-GCGGGUGGugCGGG----UCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.