miRNA display CGI


Results 141 - 160 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 39663 0.66 0.837199
Target:  5'- aUGGCUCGgCUggugguguuaGCCaugaACGCCguGCGCCa -3'
miRNA:   3'- cGCUGAGCgGG----------UGG----UGCGGguCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 223593 0.66 0.837199
Target:  5'- cCGGCUCGCUugccaUACCGCGCgaCGGCGa- -3'
miRNA:   3'- cGCUGAGCGG-----GUGGUGCGg-GUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 137376 0.66 0.837199
Target:  5'- cGUGGCgCGCaaCCGCCGCGaCCUGGCGg- -3'
miRNA:   3'- -CGCUGaGCG--GGUGGUGC-GGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 39236 0.66 0.837199
Target:  5'- aGCGG-UgGCCCGCgGCGCguUCAGCcCCa -3'
miRNA:   3'- -CGCUgAgCGGGUGgUGCG--GGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 187285 0.66 0.837199
Target:  5'- aGCGGCaccUCGaCCCGgaGCGgaCAGCACCa -3'
miRNA:   3'- -CGCUG---AGC-GGGUggUGCggGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 161916 0.66 0.835656
Target:  5'- cGCGGCUUccccgucuacgagGCCCGCguggacccccugaCGCGCCUGGuCAUCg -3'
miRNA:   3'- -CGCUGAG-------------CGGGUG-------------GUGCGGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 185298 0.66 0.832551
Target:  5'- cGCGgcGCUCGCUgcgcguacccgugguCaACUACGCCUggcuggAGCACCa -3'
miRNA:   3'- -CGC--UGAGCGG---------------G-UGGUGCGGG------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 84984 0.66 0.82942
Target:  5'- cGCGACaccgUGCCCugguaaccgaugACgCAgGCCC-GCACCu -3'
miRNA:   3'- -CGCUGa---GCGGG------------UG-GUgCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 90836 0.66 0.82942
Target:  5'- uGCGGCgggUGCgCGCCGC-CCguGCugCu -3'
miRNA:   3'- -CGCUGa--GCGgGUGGUGcGGguCGugG- -5'
14631 5' -60.3 NC_003521.1 + 3788 0.66 0.82942
Target:  5'- cGCGGCacaGagCACCGCGaUCCAGCACg -3'
miRNA:   3'- -CGCUGag-CggGUGGUGC-GGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 123940 0.66 0.82942
Target:  5'- cCGGCgcgcCGCCgcaGCCGCGCCaCuGCGCg -3'
miRNA:   3'- cGCUGa---GCGGg--UGGUGCGG-GuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 217460 0.66 0.82942
Target:  5'- uGCGGgaagGCCagCACCAUGCCCAGaCACa -3'
miRNA:   3'- -CGCUgag-CGG--GUGGUGCGGGUC-GUGg -5'
14631 5' -60.3 NC_003521.1 + 106313 0.66 0.82942
Target:  5'- gGCGGCcgugcgcaUCGCCUGCCucaucCGCCagagcgugcagAGCACCa -3'
miRNA:   3'- -CGCUG--------AGCGGGUGGu----GCGGg----------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 168406 0.66 0.82942
Target:  5'- -gGACUCGCCCuCUuC-CUCAGUGCCu -3'
miRNA:   3'- cgCUGAGCGGGuGGuGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 205790 0.66 0.82942
Target:  5'- aCGGCaugagcgUGCCCaACCGCGUCCgccgGGCACg -3'
miRNA:   3'- cGCUGa------GCGGG-UGGUGCGGG----UCGUGg -5'
14631 5' -60.3 NC_003521.1 + 72406 0.66 0.82942
Target:  5'- cGCGGCccUG-CCGCC-CGCCCuAGcCACCa -3'
miRNA:   3'- -CGCUGa-GCgGGUGGuGCGGG-UC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 56114 0.66 0.82942
Target:  5'- aGCG--UCGCgUAU--UGCCCAGCACCa -3'
miRNA:   3'- -CGCugAGCGgGUGguGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 184018 0.66 0.82942
Target:  5'- cCGACUCGUUCGCgCGCGaCgCCGGUugggcgGCCa -3'
miRNA:   3'- cGCUGAGCGGGUG-GUGC-G-GGUCG------UGG- -5'
14631 5' -60.3 NC_003521.1 + 148078 0.66 0.82942
Target:  5'- uCGACUgGUUCAggaccgugcUCugGuCCCGGCGCCa -3'
miRNA:   3'- cGCUGAgCGGGU---------GGugC-GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 209523 0.66 0.82942
Target:  5'- gGUGACcgUCGCCgCugCcgcgguuauGCGCCCGGCGg- -3'
miRNA:   3'- -CGCUG--AGCGG-GugG---------UGCGGGUCGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.