miRNA display CGI


Results 101 - 120 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 42555 0.66 0.821485
Target:  5'- cGCGA--CGCCCGgCugGCuguCCGGCgGCCg -3'
miRNA:   3'- -CGCUgaGCGGGUgGugCG---GGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 42971 0.68 0.753148
Target:  5'- cGCGACccgccggCGCCCACCgACGaCCuGCagacgGCCg -3'
miRNA:   3'- -CGCUGa------GCGGGUGG-UGCgGGuCG-----UGG- -5'
14631 5' -60.3 NC_003521.1 + 43103 0.68 0.750446
Target:  5'- cGCGACgaGCUgACCaagcgcugcggcgaGCGCUCGGCGCUg -3'
miRNA:   3'- -CGCUGagCGGgUGG--------------UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 43480 0.66 0.828634
Target:  5'- cGCGGCggccgUGCUgGCCGCGgCggccaacauccguCAGCGCCu -3'
miRNA:   3'- -CGCUGa----GCGGgUGGUGCgG-------------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 43555 0.66 0.837199
Target:  5'- --cGCUC-CCCGCCgccgGCGCCgcgucaAGCACCg -3'
miRNA:   3'- cgcUGAGcGGGUGG----UGCGGg-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 43653 0.73 0.446917
Target:  5'- cCGcCUCcaGCCCuGCCAgGCCCAGCGCg -3'
miRNA:   3'- cGCuGAG--CGGG-UGGUgCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 43833 0.67 0.805168
Target:  5'- aGCcGC-CGCCgGCCGCggGCCCgucacaGGCGCCc -3'
miRNA:   3'- -CGcUGaGCGGgUGGUG--CGGG------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 43930 0.67 0.779679
Target:  5'- aCGACcCGCCUuCCGC-CCCGGCcucACCc -3'
miRNA:   3'- cGCUGaGCGGGuGGUGcGGGUCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 44021 0.7 0.609035
Target:  5'- gGCGACgUCGaugacugcuacgguCCCguuuACCGCGCCCGcggucGCGCCg -3'
miRNA:   3'- -CGCUG-AGC--------------GGG----UGGUGCGGGU-----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 44356 0.67 0.796799
Target:  5'- cGCGACgCGCUgGggcugcggcCCACGCCCGagGCCg -3'
miRNA:   3'- -CGCUGaGCGGgU---------GGUGCGGGUcgUGG- -5'
14631 5' -60.3 NC_003521.1 + 44447 0.66 0.858811
Target:  5'- gGCGGCUCGgCgaugcgaguacaaCGCCACGCacuaCCuGCACg -3'
miRNA:   3'- -CGCUGAGCgG-------------GUGGUGCG----GGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 44568 0.66 0.85953
Target:  5'- cGCGGgUa-CCCggaaccacagaaACCGCGCCaGGCGCCa -3'
miRNA:   3'- -CGCUgAgcGGG------------UGGUGCGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 44759 0.7 0.602345
Target:  5'- cGCGccaguccacCUCGCCgGCCuucCGCCCGGUGCUc -3'
miRNA:   3'- -CGCu--------GAGCGGgUGGu--GCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 45570 0.67 0.813398
Target:  5'- aGCGuggagcccuuCUCGCCCuacucggugGCCuACaaCCAGCACCg -3'
miRNA:   3'- -CGCu---------GAGCGGG---------UGG-UGcgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 47014 0.69 0.669324
Target:  5'- cGCGGC-CuCUaacggUACCACGCCCGGCAUUg -3'
miRNA:   3'- -CGCUGaGcGG-----GUGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 47506 0.76 0.309666
Target:  5'- gGCGACcacccccaccgUGCCCACCAC-CCCcGCGCCg -3'
miRNA:   3'- -CGCUGa----------GCGGGUGGUGcGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 47540 0.68 0.7165
Target:  5'- nCGACUCcgaCGCC-CGuCCCGGCACCc -3'
miRNA:   3'- cGCUGAGcggGUGGuGC-GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 47610 0.72 0.508701
Target:  5'- cCGACUUGgCCGCCAuCGUCCAGgCgGCCg -3'
miRNA:   3'- cGCUGAGCgGGUGGU-GCGGGUC-G-UGG- -5'
14631 5' -60.3 NC_003521.1 + 48159 0.66 0.852259
Target:  5'- uCGGCgaGCCCAagACGCCCaAGC-CCg -3'
miRNA:   3'- cGCUGagCGGGUggUGCGGG-UCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 48358 0.73 0.481742
Target:  5'- cCGAC-CGCCguCCugGaaaCCGGCGCCg -3'
miRNA:   3'- cGCUGaGCGGguGGugCg--GGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.