miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 49198 0.66 0.837199
Target:  5'- --cGCUCGCuUCGCCGCGCaCAGCAa- -3'
miRNA:   3'- cgcUGAGCG-GGUGGUGCGgGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 49739 0.68 0.734981
Target:  5'- -aGACgcaGCCCGCCGcCGCCaccaCGGuCGCCg -3'
miRNA:   3'- cgCUGag-CGGGUGGU-GCGG----GUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 52767 0.66 0.844813
Target:  5'- aGCGGCUCuaCCGCgGCaucgacaaCCCGcuGCACCg -3'
miRNA:   3'- -CGCUGAGcgGGUGgUGc-------GGGU--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 52928 0.68 0.734981
Target:  5'- uCGACcUGCCC-CCGcCGCCC-GUGCCg -3'
miRNA:   3'- cGCUGaGCGGGuGGU-GCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 52991 0.69 0.697767
Target:  5'- -aGGC-CGUCCGCaACGCCCuGCGCa -3'
miRNA:   3'- cgCUGaGCGGGUGgUGCGGGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 53170 0.66 0.858811
Target:  5'- cGCGGC-CGCCCucGCCGaugaagaUGgCCAGCGgCg -3'
miRNA:   3'- -CGCUGaGCGGG--UGGU-------GCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 53212 0.72 0.490654
Target:  5'- cCGGCUCGCCCuggcagGCCGUGCCCAccgGCAgCa -3'
miRNA:   3'- cGCUGAGCGGG------UGGUGCGGGU---CGUgG- -5'
14631 5' -60.3 NC_003521.1 + 53324 0.67 0.804337
Target:  5'- cCGuCUCGUcggaucgucgugaCCACCACGC-CGGCGCg -3'
miRNA:   3'- cGCuGAGCG-------------GGUGGUGCGgGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 53434 0.69 0.688325
Target:  5'- aGCGGaagguCUCGUUCACCA-GCUCGGCgGCCa -3'
miRNA:   3'- -CGCU-----GAGCGGGUGGUgCGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 53734 0.69 0.707162
Target:  5'- uCGACUccaucgCGUCCcgagaACCGCGCCCuccgcucgcuGGCACCc -3'
miRNA:   3'- cGCUGA------GCGGG-----UGGUGCGGG----------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 53898 0.67 0.779679
Target:  5'- cGCcGC-CGCCC-CCGC-CaCCGGCGCCc -3'
miRNA:   3'- -CGcUGaGCGGGuGGUGcG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 54195 0.66 0.837199
Target:  5'- uCGACUUGCcgCCACCAcCGCCgc-CGCCg -3'
miRNA:   3'- cGCUGAGCG--GGUGGU-GCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 55051 0.67 0.805168
Target:  5'- cGCGuCUUGCgcuCCAUCGCgGCCCcuaGGCGCUc -3'
miRNA:   3'- -CGCuGAGCG---GGUGGUG-CGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 55201 0.66 0.821485
Target:  5'- gGCGAUggcaGUCCGCCGCGCUCcgucGGCGu- -3'
miRNA:   3'- -CGCUGag--CGGGUGGUGCGGG----UCGUgg -5'
14631 5' -60.3 NC_003521.1 + 55247 0.67 0.788301
Target:  5'- aGCGGCUCGCCgGCgA-GCCC-GCGg- -3'
miRNA:   3'- -CGCUGAGCGGgUGgUgCGGGuCGUgg -5'
14631 5' -60.3 NC_003521.1 + 55838 0.69 0.710904
Target:  5'- cGCGGCagGCcggccuugcacagguCCACgCugGCCC-GCACCg -3'
miRNA:   3'- -CGCUGagCG---------------GGUG-GugCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 56114 0.66 0.82942
Target:  5'- aGCG--UCGCgUAU--UGCCCAGCACCa -3'
miRNA:   3'- -CGCugAGCGgGUGguGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 56149 0.66 0.858811
Target:  5'- uGCGGCUCGUgCugCuCGCUgcgcgcgaacacgCAGCGCg -3'
miRNA:   3'- -CGCUGAGCGgGugGuGCGG-------------GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 56339 0.7 0.650217
Target:  5'- cGCGGC-CGCgCAggGCGCacaCCAGCACCu -3'
miRNA:   3'- -CGCUGaGCGgGUggUGCG---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 56671 0.66 0.837199
Target:  5'- --cGCUCGCgCACCAggucgcaguagcCGCCCAGgCAgCg -3'
miRNA:   3'- cgcUGAGCGgGUGGU------------GCGGGUC-GUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.