miRNA display CGI


Results 141 - 160 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 56911 0.77 0.277709
Target:  5'- cGCGACagCGCCgcagCACCGCcUCCAGCACCu -3'
miRNA:   3'- -CGCUGa-GCGG----GUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 57139 0.72 0.527023
Target:  5'- aGCGAuagguCUCGUCgGCCACGCgCGGCAg- -3'
miRNA:   3'- -CGCU-----GAGCGGgUGGUGCGgGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 57376 0.7 0.627227
Target:  5'- cGUGACgCGCCagggcgucgaucUCGCGCCaCAGCGCCg -3'
miRNA:   3'- -CGCUGaGCGGgu----------GGUGCGG-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 57546 0.69 0.692107
Target:  5'- aGCGAggccccgaaauccucCUCGUCCuCgCGCGCCUucgagGGCGCCg -3'
miRNA:   3'- -CGCU---------------GAGCGGGuG-GUGCGGG-----UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 57730 0.7 0.640641
Target:  5'- aCGAgUCGCagaagagaUCGCCGuCGCCCAGUACa -3'
miRNA:   3'- cGCUgAGCG--------GGUGGU-GCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 57773 0.67 0.769181
Target:  5'- gGCGACgaucccacaaucgcCGUucucaucauguucuuCCACgACGCCCAGCuGCCg -3'
miRNA:   3'- -CGCUGa-------------GCG---------------GGUGgUGCGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 58939 0.71 0.583288
Target:  5'- uGCGcCUCGaacuCCACCAgGCCCucuGGCGCg -3'
miRNA:   3'- -CGCuGAGCg---GGUGGUgCGGG---UCGUGg -5'
14631 5' -60.3 NC_003521.1 + 59364 0.68 0.734981
Target:  5'- gGCGGCgCGCCaGCCgcuggACGCCgcgCAGCACUu -3'
miRNA:   3'- -CGCUGaGCGGgUGG-----UGCGG---GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 59537 0.69 0.688325
Target:  5'- uCGAaUCGCagCACCccuuucccGCGUCCGGCGCCg -3'
miRNA:   3'- cGCUgAGCGg-GUGG--------UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 59938 0.7 0.640641
Target:  5'- cCGACguggaCGCCgAUCAacaGCCCGGCGCg -3'
miRNA:   3'- cGCUGa----GCGGgUGGUg--CGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 59993 0.67 0.779679
Target:  5'- cCGGCUCuucaccggcaGCCUGCagcaGCGCgaCAGCACCg -3'
miRNA:   3'- cGCUGAG----------CGGGUGg---UGCGg-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 60421 0.79 0.213758
Target:  5'- cGCGGC-CGCCagCACCaccagcaguacuccgGCGCCCAGUACCa -3'
miRNA:   3'- -CGCUGaGCGG--GUGG---------------UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 60612 0.68 0.762096
Target:  5'- cGCGGCa---CCACCaACGCCgAGCGCg -3'
miRNA:   3'- -CGCUGagcgGGUGG-UGCGGgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 60711 0.66 0.852259
Target:  5'- gGCGGCgcggGUCgCACCACGCCgCuGC-CCu -3'
miRNA:   3'- -CGCUGag--CGG-GUGGUGCGG-GuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 61207 0.67 0.788301
Target:  5'- cGUGAUcCGCgaCAUCACGCgCAGCAgCa -3'
miRNA:   3'- -CGCUGaGCGg-GUGGUGCGgGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 61605 0.7 0.63106
Target:  5'- cGCGGCggGaCCaacaagagaACCACGUUCAGCGCCu -3'
miRNA:   3'- -CGCUGagC-GGg--------UGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 62018 0.69 0.706225
Target:  5'- uCGACcCGCCCGCCGggcaugccuCGCCCgucccgcGGaCGCCg -3'
miRNA:   3'- cGCUGaGCGGGUGGU---------GCGGG-------UC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 62341 0.68 0.713705
Target:  5'- uCGACUCGUCCuucggcagcacgguGCaCGCGCUCucGCGCCc -3'
miRNA:   3'- cGCUGAGCGGG--------------UG-GUGCGGGu-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 62440 0.66 0.852259
Target:  5'- uCGuCUgaGCCCGCCGCGCgC-GCACg -3'
miRNA:   3'- cGCuGAg-CGGGUGGUGCGgGuCGUGg -5'
14631 5' -60.3 NC_003521.1 + 62816 0.69 0.687378
Target:  5'- cGUGGC-CGCCUccguccuACC-CGCCCuacccGCACCg -3'
miRNA:   3'- -CGCUGaGCGGG-------UGGuGCGGGu----CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.