miRNA display CGI


Results 161 - 180 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 63017 0.74 0.421738
Target:  5'- cCGGCggCGCCCACgACGCCCAcCAgCg -3'
miRNA:   3'- cGCUGa-GCGGGUGgUGCGGGUcGUgG- -5'
14631 5' -60.3 NC_003521.1 + 64190 0.71 0.570964
Target:  5'- cGCGACUgcgucagcaguaccUGCUgGCCACGCagCAGCGCg -3'
miRNA:   3'- -CGCUGA--------------GCGGgUGGUGCGg-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 64475 0.68 0.725776
Target:  5'- aCGACaaccCGCCCACCGaucaggGCCUaaAGCGCUa -3'
miRNA:   3'- cGCUGa---GCGGGUGGUg-----CGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 64749 0.68 0.7165
Target:  5'- cGUGGCcaagaCGCCgGCCG-GCgCGGCACCg -3'
miRNA:   3'- -CGCUGa----GCGGgUGGUgCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 64989 0.68 0.745016
Target:  5'- -aGACUCaggcagaucacgaucCCCACCAcuauuaccaugcCGCCCAGgGCCg -3'
miRNA:   3'- cgCUGAGc--------------GGGUGGU------------GCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 64990 0.7 0.64926
Target:  5'- aCGACgugCGCCgCuucuuggACCGCGCCCcuAGCACg -3'
miRNA:   3'- cGCUGa--GCGG-G-------UGGUGCGGG--UCGUGg -5'
14631 5' -60.3 NC_003521.1 + 65185 0.67 0.796799
Target:  5'- aCGAUaCGCUCucgACCGUGCCCGGCAUg -3'
miRNA:   3'- cGCUGaGCGGG---UGGUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 65374 0.68 0.744107
Target:  5'- -aGACggCGCgCCGCCgaucguACGCCgAGCACg -3'
miRNA:   3'- cgCUGa-GCG-GGUGG------UGCGGgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 66595 0.66 0.852259
Target:  5'- aGCGucaugaUCGCUCGCCAacCCCAGauCACCa -3'
miRNA:   3'- -CGCug----AGCGGGUGGUgcGGGUC--GUGG- -5'
14631 5' -60.3 NC_003521.1 + 68041 0.71 0.564354
Target:  5'- gGCGGCgUgGUCCGCgGCGCCCccgguGGCAgCCa -3'
miRNA:   3'- -CGCUG-AgCGGGUGgUGCGGG-----UCGU-GG- -5'
14631 5' -60.3 NC_003521.1 + 68426 0.69 0.697767
Target:  5'- gGCGACggcuccgccggCGCCCcucaACCGCGUgccggUCAGCAUCg -3'
miRNA:   3'- -CGCUGa----------GCGGG----UGGUGCG-----GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 68501 0.69 0.688325
Target:  5'- --cACcCGUCCGCCGCgaccgGCCUGGCGCCa -3'
miRNA:   3'- cgcUGaGCGGGUGGUG-----CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69166 0.72 0.499641
Target:  5'- cCGACgcucccgaCGCCCGCCGCGgCC-GCGCUa -3'
miRNA:   3'- cGCUGa-------GCGGGUGGUGCgGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69504 0.72 0.508701
Target:  5'- -aGACggCGCagGCCGCguugagGCCCAGCACCg -3'
miRNA:   3'- cgCUGa-GCGggUGGUG------CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69868 0.71 0.545586
Target:  5'- -aGGC-CGCCgcgcagCGCCACGCCCAG-GCCa -3'
miRNA:   3'- cgCUGaGCGG------GUGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 69939 0.66 0.82942
Target:  5'- cGCGACgccggaCGCCUGaccacCCGCGCCC-GCcCCc -3'
miRNA:   3'- -CGCUGa-----GCGGGU-----GGUGCGGGuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 70087 0.67 0.805168
Target:  5'- aGCGGgUUGCCgcagggCACCugGCCgGcGUGCCg -3'
miRNA:   3'- -CGCUgAGCGG------GUGGugCGGgU-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 70527 0.68 0.7165
Target:  5'- cGUGAC-CGCCU--CGCGCUCGGCcgGCCg -3'
miRNA:   3'- -CGCUGaGCGGGugGUGCGGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 70621 0.66 0.844813
Target:  5'- aCGACcccUCGUgCCACUACcuccaCCGGCACCa -3'
miRNA:   3'- cGCUG---AGCG-GGUGGUGcg---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 70882 0.72 0.508701
Target:  5'- aCGACauaUCGCCaCACCAgGgCCAGCAgCg -3'
miRNA:   3'- cGCUG---AGCGG-GUGGUgCgGGUCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.