miRNA display CGI


Results 81 - 100 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 209523 0.66 0.82942
Target:  5'- gGUGACcgUCGCCgCugCcgcgguuauGCGCCCGGCGg- -3'
miRNA:   3'- -CGCUG--AGCGG-GugG---------UGCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 209090 0.7 0.602345
Target:  5'- gGCGGCggaggcggUGgCCGCgGCGuCCCAGCACg -3'
miRNA:   3'- -CGCUGa-------GCgGGUGgUGC-GGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 208694 0.69 0.697767
Target:  5'- gGUGcACcgCGCCCGCUACcuGCCCGagaucagccGCGCCg -3'
miRNA:   3'- -CGC-UGa-GCGGGUGGUG--CGGGU---------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 208624 0.72 0.526101
Target:  5'- uGCGAgccaUC-CCCACCAUGCCCgacccgcAGCACUu -3'
miRNA:   3'- -CGCUg---AGcGGGUGGUGCGGG-------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 208303 0.7 0.640641
Target:  5'- cGCGAUcCGCUCACCACcuaCgAGUACCu -3'
miRNA:   3'- -CGCUGaGCGGGUGGUGcg-GgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 207623 0.73 0.455493
Target:  5'- gGCGGCUCGCCgGCC-UGCaCCuuCACCu -3'
miRNA:   3'- -CGCUGAGCGGgUGGuGCG-GGucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206879 0.73 0.481742
Target:  5'- aGCuGCUCG-CCGCgCACGCCgcacagCAGCACCa -3'
miRNA:   3'- -CGcUGAGCgGGUG-GUGCGG------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206413 0.76 0.330148
Target:  5'- cGCGACgcccagcugaUC-CUCACCugGCCCgAGCGCCa -3'
miRNA:   3'- -CGCUG----------AGcGGGUGGugCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206368 0.72 0.508701
Target:  5'- uGCGGCgaCGaCCC-CCAgGCCCgcAGCGCCu -3'
miRNA:   3'- -CGCUGa-GC-GGGuGGUgCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206308 0.67 0.805168
Target:  5'- cGCGuCUCgGCCCgcgGCCGCuaCCuGCGCUc -3'
miRNA:   3'- -CGCuGAG-CGGG---UGGUGcgGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 205790 0.66 0.82942
Target:  5'- aCGGCaugagcgUGCCCaACCGCGUCCgccgGGCACg -3'
miRNA:   3'- cGCUGa------GCGGG-UGGUGCGGG----UCGUGg -5'
14631 5' -60.3 NC_003521.1 + 205173 0.71 0.583288
Target:  5'- uCGAgCUCGCCUGCCGCuCgCAGCGCg -3'
miRNA:   3'- cGCU-GAGCGGGUGGUGcGgGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 205003 0.69 0.697767
Target:  5'- uCGGCgCGCaCCGCCAgguucuCGCCCA-CGCCg -3'
miRNA:   3'- cGCUGaGCG-GGUGGU------GCGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 204558 0.69 0.696825
Target:  5'- aGCGcCUCGaUCCACgaauccaccacguCGCGCCCGGCAg- -3'
miRNA:   3'- -CGCuGAGC-GGGUG-------------GUGCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 204464 0.7 0.602345
Target:  5'- cGCGAa--GCCgCGCCACGCC-AGC-CCg -3'
miRNA:   3'- -CGCUgagCGG-GUGGUGCGGgUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 204412 0.66 0.821485
Target:  5'- cCGAC-CGCgaaauCCACGCCCcGCGCUg -3'
miRNA:   3'- cGCUGaGCGggu--GGUGCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 204041 0.68 0.762096
Target:  5'- -aGGCgCGUCCuCCACGCCC-GCcagGCCa -3'
miRNA:   3'- cgCUGaGCGGGuGGUGCGGGuCG---UGG- -5'
14631 5' -60.3 NC_003521.1 + 204037 0.7 0.640641
Target:  5'- aGCGGCUCcgcagcgcgugGCCCuGCCAguCGCCgCAgucGCACCa -3'
miRNA:   3'- -CGCUGAG-----------CGGG-UGGU--GCGG-GU---CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 203006 0.77 0.265092
Target:  5'- gGCGGCUCGCCCGCCAagacggGUUCGGCggugauaGCCg -3'
miRNA:   3'- -CGCUGAGCGGGUGGUg-----CGGGUCG-------UGG- -5'
14631 5' -60.3 NC_003521.1 + 202653 0.71 0.554947
Target:  5'- aGCGGC---CCCGCUgggACGCCCuGCACCu -3'
miRNA:   3'- -CGCUGagcGGGUGG---UGCGGGuCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.