miRNA display CGI


Results 101 - 120 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 202587 0.78 0.242898
Target:  5'- cGCGuCUCGCCCcgcccGCCGaggcCGCCCuGCGCCu -3'
miRNA:   3'- -CGCuGAGCGGG-----UGGU----GCGGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 202438 0.66 0.85953
Target:  5'- aCGGC-CGgCC-CUACGCCCAG-GCCc -3'
miRNA:   3'- cGCUGaGCgGGuGGUGCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 202371 0.67 0.796799
Target:  5'- aCGGC-CGCCgACC-UGCuCCAGCAgCa -3'
miRNA:   3'- cGCUGaGCGGgUGGuGCG-GGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 202337 0.67 0.788301
Target:  5'- cGgGGCUCGaguaagaaCGCCgGCGCCCAcCGCCa -3'
miRNA:   3'- -CgCUGAGCgg------GUGG-UGCGGGUcGUGG- -5'
14631 5' -60.3 NC_003521.1 + 202253 0.67 0.778811
Target:  5'- cGCGccccacaACUCGUCCGCUGCuaCCuGUGCCg -3'
miRNA:   3'- -CGC-------UGAGCGGGUGGUGcgGGuCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 200378 0.66 0.819879
Target:  5'- cGCGACcgggcuagagcgCGCgagCACCugGCCgugguggaCAGCACCg -3'
miRNA:   3'- -CGCUGa-----------GCGg--GUGGugCGG--------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 200067 0.66 0.837199
Target:  5'- gGCuGGCUuacCGCCgGCUugGCCucgcCAGCACa -3'
miRNA:   3'- -CG-CUGA---GCGGgUGGugCGG----GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 200023 0.66 0.85953
Target:  5'- gGCGAauaGCUgACCGCGCCgGGaguCCg -3'
miRNA:   3'- -CGCUgagCGGgUGGUGCGGgUCgu-GG- -5'
14631 5' -60.3 NC_003521.1 + 197683 0.79 0.202215
Target:  5'- aGCG-CgUGCaCCuCCACGCCCAGCGCCg -3'
miRNA:   3'- -CGCuGaGCG-GGuGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 197591 0.72 0.527023
Target:  5'- uGCuACUCGCCCuucCCGCuGCCCGGUAa- -3'
miRNA:   3'- -CGcUGAGCGGGu--GGUG-CGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 197318 0.73 0.437586
Target:  5'- gGCGGCaggCGCugacggauguuggCCGCCGCGgCCAGCACg -3'
miRNA:   3'- -CGCUGa--GCG-------------GGUGGUGCgGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 196742 0.67 0.788301
Target:  5'- gGCGGCggCGCCUgcaccgucugcuGCCcCGgCCGGCGCg -3'
miRNA:   3'- -CGCUGa-GCGGG------------UGGuGCgGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 196505 0.66 0.86592
Target:  5'- cGUGucuCUCGUCCcgcagcgGCCAcagcaaccCGCCCAGCucCCg -3'
miRNA:   3'- -CGCu--GAGCGGG-------UGGU--------GCGGGUCGu-GG- -5'
14631 5' -60.3 NC_003521.1 + 196500 0.71 0.545586
Target:  5'- uGCaGCUUGCCCAgCACcuGCuUCAGCACCc -3'
miRNA:   3'- -CGcUGAGCGGGUgGUG--CG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 196215 0.67 0.778811
Target:  5'- cCGGCUCGUCUcauucucuggcugACUugGCGCCUGGCGCg -3'
miRNA:   3'- cGCUGAGCGGG-------------UGG--UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 196012 0.75 0.381738
Target:  5'- gGCGugUCGCCCuccgGCCAucCGCUCAGCguuugucgGCCu -3'
miRNA:   3'- -CGCugAGCGGG----UGGU--GCGGGUCG--------UGG- -5'
14631 5' -60.3 NC_003521.1 + 195799 0.66 0.86662
Target:  5'- -aGGuCUCGCCCugCACGgCCguGGgAUCg -3'
miRNA:   3'- cgCU-GAGCGGGugGUGCgGG--UCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 195533 0.72 0.536276
Target:  5'- cCGGCUCcugGCCCAgCgGCGCCCGGU-CCa -3'
miRNA:   3'- cGCUGAG---CGGGU-GgUGCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 194748 0.69 0.678841
Target:  5'- uGCGACgccgggcgUCGCgaccUCAUCcCGCCCGGUGCCa -3'
miRNA:   3'- -CGCUG--------AGCG----GGUGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 194537 0.71 0.564354
Target:  5'- uGCGAUcgaacUGUCUGCCGCGUCgGGCGCCu -3'
miRNA:   3'- -CGCUGa----GCGGGUGGUGCGGgUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.