miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 194488 0.66 0.821485
Target:  5'- aGCGACUCGCacauCGCCAC-CCacauguGGCcCCa -3'
miRNA:   3'- -CGCUGAGCGg---GUGGUGcGGg-----UCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 194390 0.75 0.361962
Target:  5'- cGCGACucgcuguuauacgcuUCGCCCGucgccgcuuCCugGCCCGcGCGCCc -3'
miRNA:   3'- -CGCUG---------------AGCGGGU---------GGugCGGGU-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 193620 0.67 0.812581
Target:  5'- gGUGugUUGCCCgcgcugaaaccugACCACGUCguaCAGCgACCc -3'
miRNA:   3'- -CGCugAGCGGG-------------UGGUGCGG---GUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 193365 0.66 0.86662
Target:  5'- aCGAguucCUCGaCCaggaguGCgGCGCCCGGCugCa -3'
miRNA:   3'- cGCU----GAGC-GGg-----UGgUGCGGGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 191824 0.67 0.788301
Target:  5'- -gGACUCGgcguCCCGCagCACGUuccUCAGCGCCu -3'
miRNA:   3'- cgCUGAGC----GGGUG--GUGCG---GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 191757 0.68 0.753148
Target:  5'- cCGACg-GUCCACCGgGUCCuguccGCACCu -3'
miRNA:   3'- cGCUGagCGGGUGGUgCGGGu----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 191455 0.69 0.707162
Target:  5'- uGCGuuuCUCGUCCGCUuccuCaCCCGGcCACCa -3'
miRNA:   3'- -CGCu--GAGCGGGUGGu---GcGGGUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 191214 0.67 0.796799
Target:  5'- cCGugUCcUCCGCguC-CCCAGCGCCg -3'
miRNA:   3'- cGCugAGcGGGUGguGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 191148 0.74 0.397434
Target:  5'- gGCGACagCGCCgCGCU-CGCCCGGCcCCu -3'
miRNA:   3'- -CGCUGa-GCGG-GUGGuGCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 188304 0.66 0.85953
Target:  5'- gGCGGCUCuucUUCGCCGCGCUCucUACCg -3'
miRNA:   3'- -CGCUGAGc--GGGUGGUGCGGGucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 188136 0.77 0.296557
Target:  5'- aGCGGCUgGCaCCGCCgACGCugCCGGUGCCg -3'
miRNA:   3'- -CGCUGAgCG-GGUGG-UGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 187731 0.77 0.277709
Target:  5'- cGUGACUUGUCUcaucGCCACGUCCAGCgACUg -3'
miRNA:   3'- -CGCUGAGCGGG----UGGUGCGGGUCG-UGG- -5'
14631 5' -60.3 NC_003521.1 + 187285 0.66 0.837199
Target:  5'- aGCGGCaccUCGaCCCGgaGCGgaCAGCACCa -3'
miRNA:   3'- -CGCUG---AGC-GGGUggUGCggGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 187223 0.67 0.796799
Target:  5'- cGUGACUCGCUCcCCuuCGgccaCCAGCAUg -3'
miRNA:   3'- -CGCUGAGCGGGuGGu-GCg---GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 186874 0.67 0.779679
Target:  5'- aCGGCUCGUCgGCC-CaGCUCAGCGucuCCa -3'
miRNA:   3'- cGCUGAGCGGgUGGuG-CGGGUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 186469 0.67 0.805168
Target:  5'- -aGAaa-GCUCGCCACGCCCcgaguGGC-CCa -3'
miRNA:   3'- cgCUgagCGGGUGGUGCGGG-----UCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 186308 0.66 0.82942
Target:  5'- aGCGGCgccgUGCagauCCugguCCACGCCgGGcCGCCg -3'
miRNA:   3'- -CGCUGa---GCG----GGu---GGUGCGGgUC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 185718 0.66 0.862388
Target:  5'- cGCGuCUCGCCgggugcggaggugauCGCCgagcggguGCGCCgGaGCGCCu -3'
miRNA:   3'- -CGCuGAGCGG---------------GUGG--------UGCGGgU-CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 185579 0.67 0.788301
Target:  5'- cGCgGGCUCGCCgGCgAgcCGCUCGGgGCUg -3'
miRNA:   3'- -CG-CUGAGCGGgUGgU--GCGGGUCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 185298 0.66 0.832551
Target:  5'- cGCGgcGCUCGCUgcgcguacccgugguCaACUACGCCUggcuggAGCACCa -3'
miRNA:   3'- -CGC--UGAGCGG---------------G-UGGUGCGGG------UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.