miRNA display CGI


Results 101 - 120 of 720 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 70882 0.72 0.508701
Target:  5'- aCGACauaUCGCCaCACCAgGgCCAGCAgCg -3'
miRNA:   3'- cGCUG---AGCGG-GUGGUgCgGGUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 113746 0.72 0.508701
Target:  5'- -gGGC-CGCCUcucgucggugGCCcUGCCCGGCACCg -3'
miRNA:   3'- cgCUGaGCGGG----------UGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 154939 0.72 0.508701
Target:  5'- uGCGACacgCGCCUcuACCgcgaGCGCCUGGUGCCc -3'
miRNA:   3'- -CGCUGa--GCGGG--UGG----UGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 226833 0.72 0.508701
Target:  5'- gGgGucCUCGCCCgccGCCGCGCCgGGCAggcCCa -3'
miRNA:   3'- -CgCu-GAGCGGG---UGGUGCGGgUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 85660 0.72 0.51783
Target:  5'- cGCGGC-CGCCagcuguuccgaGCCgGCGUCCAGCACg -3'
miRNA:   3'- -CGCUGaGCGGg----------UGG-UGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 206879 0.73 0.481742
Target:  5'- aGCuGCUCG-CCGCgCACGCCgcacagCAGCACCa -3'
miRNA:   3'- -CGcUGAGCgGGUG-GUGCGG------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 212988 0.73 0.478199
Target:  5'- aGCGGCUCGCCCuggugaaACUggaucuguaccaugGCGCCgGGCgaGCCg -3'
miRNA:   3'- -CGCUGAGCGGG-------UGG--------------UGCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 112988 0.74 0.397434
Target:  5'- aGCGGCgggCGCCacUACCAC-CCgGGCACCu -3'
miRNA:   3'- -CGCUGa--GCGG--GUGGUGcGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 191148 0.74 0.397434
Target:  5'- gGCGACagCGCCgCGCU-CGCCCGGCcCCu -3'
miRNA:   3'- -CGCUGa-GCGG-GUGGuGCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 92925 0.74 0.408664
Target:  5'- aGCGACggCGCCauuuuuccgaucgaaCACCAaaauCCCAGCACCa -3'
miRNA:   3'- -CGCUGa-GCGG---------------GUGGUgc--GGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 39436 0.74 0.421738
Target:  5'- uGCcGCU-GCCgGCCGaGCCCGGCGCCg -3'
miRNA:   3'- -CGcUGAgCGGgUGGUgCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 63017 0.74 0.421738
Target:  5'- cCGGCggCGCCCACgACGCCCAcCAgCg -3'
miRNA:   3'- cGCUGa-GCGGGUGgUGCGGGUcGUgG- -5'
14631 5' -60.3 NC_003521.1 + 34851 0.74 0.430036
Target:  5'- gGCGAgUgagagcCGCCCACCACGUagaAGCACUg -3'
miRNA:   3'- -CGCUgA------GCGGGUGGUGCGgg-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225489 0.74 0.430036
Target:  5'- cGCGACUgcugcaccagcgCGCUgauCACC-CGCUCGGCGCCg -3'
miRNA:   3'- -CGCUGA------------GCGG---GUGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 40488 0.73 0.43843
Target:  5'- cGCGGCgCG-CCACgGCGCCgCAGCGCa -3'
miRNA:   3'- -CGCUGaGCgGGUGgUGCGG-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 135827 0.73 0.446917
Target:  5'- gGCGACgaaCGCUC-CCGUGCCCaugAGCACCg -3'
miRNA:   3'- -CGCUGa--GCGGGuGGUGCGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 36509 0.73 0.450337
Target:  5'- aCGACUggagcaacaucgugaCGCCCAaauCGUCCAGCGCCg -3'
miRNA:   3'- cGCUGA---------------GCGGGUgguGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 142550 0.73 0.455493
Target:  5'- aGUGACggcuugUCGCCCGCCAggcuCGCCguGCccGCCg -3'
miRNA:   3'- -CGCUG------AGCGGGUGGU----GCGGguCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 87915 0.73 0.464159
Target:  5'- aCGACUCcuggcuGgCCGCCGCGCCgGGCAUg -3'
miRNA:   3'- cGCUGAG------CgGGUGGUGCGGgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 150714 0.73 0.472909
Target:  5'- gGCGACUgGCUCucggccguggGCCACGUCCuGgGCCg -3'
miRNA:   3'- -CGCUGAgCGGG----------UGGUGCGGGuCgUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.