miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 73621 0.71 0.545586
Target:  5'- uGCGGCgCGCCUGCCA-GCCCAaGCAg- -3'
miRNA:   3'- -CGCUGaGCGGGUGGUgCGGGU-CGUgg -5'
14631 5' -60.3 NC_003521.1 + 134699 0.71 0.545586
Target:  5'- gGUGGCgguaggUGCCCacggccGCCACGCCCuGC-CCg -3'
miRNA:   3'- -CGCUGa-----GCGGG------UGGUGCGGGuCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 69504 0.72 0.508701
Target:  5'- -aGACggCGCagGCCGCguugagGCCCAGCACCg -3'
miRNA:   3'- cgCUGa-GCGggUGGUG------CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 154582 0.72 0.499641
Target:  5'- cGCGAUUCucaaCCGCaCGCGCUCGGCGCa -3'
miRNA:   3'- -CGCUGAGcg--GGUG-GUGCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 73658 0.72 0.499641
Target:  5'- cGCGGC-CGCCU-CCaagACGCCCgaGGCGCCc -3'
miRNA:   3'- -CGCUGaGCGGGuGG---UGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 225489 0.74 0.430036
Target:  5'- cGCGACUgcugcaccagcgCGCUgauCACC-CGCUCGGCGCCg -3'
miRNA:   3'- -CGCUGA------------GCGG---GUGGuGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 40488 0.73 0.43843
Target:  5'- cGCGGCgCG-CCACgGCGCCgCAGCGCa -3'
miRNA:   3'- -CGCUGaGCgGGUGgUGCGG-GUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 135827 0.73 0.446917
Target:  5'- gGCGACgaaCGCUC-CCGUGCCCaugAGCACCg -3'
miRNA:   3'- -CGCUGa--GCGGGuGGUGCGGG---UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 36509 0.73 0.450337
Target:  5'- aCGACUggagcaacaucgugaCGCCCAaauCGUCCAGCGCCg -3'
miRNA:   3'- cGCUGA---------------GCGGGUgguGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 142550 0.73 0.455493
Target:  5'- aGUGACggcuugUCGCCCGCCAggcuCGCCguGCccGCCg -3'
miRNA:   3'- -CGCUG------AGCGGGUGGU----GCGGguCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 87915 0.73 0.464159
Target:  5'- aCGACUCcuggcuGgCCGCCGCGCCgGGCAUg -3'
miRNA:   3'- cGCUGAG------CgGGUGGUGCGGgUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 150714 0.73 0.472909
Target:  5'- gGCGACUgGCUCucggccguggGCCACGUCCuGgGCCg -3'
miRNA:   3'- -CGCUGAgCGGG----------UGGUGCGGGuCgUGG- -5'
14631 5' -60.3 NC_003521.1 + 12588 0.71 0.554947
Target:  5'- gGCGGCa--CCCACCACGaCCAGCguACCu -3'
miRNA:   3'- -CGCUGagcGGGUGGUGCgGGUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 212988 0.73 0.478199
Target:  5'- aGCGGCUCGCCCuggugaaACUggaucuguaccaugGCGCCgGGCgaGCCg -3'
miRNA:   3'- -CGCUGAGCGGG-------UGG--------------UGCGGgUCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 206879 0.73 0.481742
Target:  5'- aGCuGCUCG-CCGCgCACGCCgcacagCAGCACCa -3'
miRNA:   3'- -CGcUGAGCgGGUG-GUGCGG------GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 152773 0.72 0.490654
Target:  5'- aCGGCgUCGCCUcCUGCGCCUugcGCACCg -3'
miRNA:   3'- cGCUG-AGCGGGuGGUGCGGGu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 28757 0.72 0.490654
Target:  5'- cGCgGGC-CGCgCCACCGC-CCUAGCGCUg -3'
miRNA:   3'- -CG-CUGaGCG-GGUGGUGcGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 53212 0.72 0.490654
Target:  5'- cCGGCUCGCCCuggcagGCCGUGCCCAccgGCAgCa -3'
miRNA:   3'- cGCUGAGCGGG------UGGUGCGGGU---CGUgG- -5'
14631 5' -60.3 NC_003521.1 + 103284 0.72 0.490654
Target:  5'- gGCGccguCUCGUcguaggCCACCACGCgCCGGUACUc -3'
miRNA:   3'- -CGCu---GAGCG------GGUGGUGCG-GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 69166 0.72 0.499641
Target:  5'- cCGACgcucccgaCGCCCGCCGCGgCC-GCGCUa -3'
miRNA:   3'- cGCUGa-------GCGGGUGGUGCgGGuCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.