Results 141 - 160 of 720 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14631 | 5' | -60.3 | NC_003521.1 | + | 226071 | 0.72 | 0.527023 |
Target: 5'- -aGGCgCGCCCcgGCCGCGgCCGGC-CCg -3' miRNA: 3'- cgCUGaGCGGG--UGGUGCgGGUCGuGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 135513 | 0.72 | 0.51783 |
Target: 5'- gGCGACgucgcgcggCGUCC-CCACGCCCGccaugaacGCGCUg -3' miRNA: 3'- -CGCUGa--------GCGGGuGGUGCGGGU--------CGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 53212 | 0.72 | 0.490654 |
Target: 5'- cCGGCUCGCCCuggcagGCCGUGCCCAccgGCAgCa -3' miRNA: 3'- cGCUGAGCGGG------UGGUGCGGGU---CGUgG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 28757 | 0.72 | 0.490654 |
Target: 5'- cGCgGGC-CGCgCCACCGC-CCUAGCGCUg -3' miRNA: 3'- -CG-CUGaGCG-GGUGGUGcGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 152773 | 0.72 | 0.490654 |
Target: 5'- aCGGCgUCGCCUcCUGCGCCUugcGCACCg -3' miRNA: 3'- cGCUG-AGCGGGuGGUGCGGGu--CGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 206879 | 0.73 | 0.481742 |
Target: 5'- aGCuGCUCG-CCGCgCACGCCgcacagCAGCACCa -3' miRNA: 3'- -CGcUGAGCgGGUG-GUGCGG------GUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 212988 | 0.73 | 0.478199 |
Target: 5'- aGCGGCUCGCCCuggugaaACUggaucuguaccaugGCGCCgGGCgaGCCg -3' miRNA: 3'- -CGCUGAGCGGG-------UGG--------------UGCGGgUCG--UGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 150714 | 0.73 | 0.472909 |
Target: 5'- gGCGACUgGCUCucggccguggGCCACGUCCuGgGCCg -3' miRNA: 3'- -CGCUGAgCGGG----------UGGUGCGGGuCgUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 87915 | 0.73 | 0.464159 |
Target: 5'- aCGACUCcuggcuGgCCGCCGCGCCgGGCAUg -3' miRNA: 3'- cGCUGAG------CgGGUGGUGCGGgUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 142550 | 0.73 | 0.455493 |
Target: 5'- aGUGACggcuugUCGCCCGCCAggcuCGCCguGCccGCCg -3' miRNA: 3'- -CGCUG------AGCGGGUGGU----GCGGguCG--UGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 103284 | 0.72 | 0.490654 |
Target: 5'- gGCGccguCUCGUcguaggCCACCACGCgCCGGUACUc -3' miRNA: 3'- -CGCu---GAGCG------GGUGGUGCG-GGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 69166 | 0.72 | 0.499641 |
Target: 5'- cCGACgcucccgaCGCCCGCCGCGgCC-GCGCUa -3' miRNA: 3'- cGCUGa-------GCGGGUGGUGCgGGuCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 85660 | 0.72 | 0.51783 |
Target: 5'- cGCGGC-CGCCagcuguuccgaGCCgGCGUCCAGCACg -3' miRNA: 3'- -CGCUGaGCGGg----------UGG-UGCGGGUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 226833 | 0.72 | 0.508701 |
Target: 5'- gGgGucCUCGCCCgccGCCGCGCCgGGCAggcCCa -3' miRNA: 3'- -CgCu-GAGCGGG---UGGUGCGGgUCGU---GG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 154939 | 0.72 | 0.508701 |
Target: 5'- uGCGACacgCGCCUcuACCgcgaGCGCCUGGUGCCc -3' miRNA: 3'- -CGCUGa--GCGGG--UGG----UGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 113746 | 0.72 | 0.508701 |
Target: 5'- -gGGC-CGCCUcucgucggugGCCcUGCCCGGCACCg -3' miRNA: 3'- cgCUGaGCGGG----------UGGuGCGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 70882 | 0.72 | 0.508701 |
Target: 5'- aCGACauaUCGCCaCACCAgGgCCAGCAgCg -3' miRNA: 3'- cGCUG---AGCGG-GUGGUgCgGGUCGUgG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 69504 | 0.72 | 0.508701 |
Target: 5'- -aGACggCGCagGCCGCguugagGCCCAGCACCg -3' miRNA: 3'- cgCUGa-GCGggUGGUG------CGGGUCGUGG- -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 154582 | 0.72 | 0.499641 |
Target: 5'- cGCGAUUCucaaCCGCaCGCGCUCGGCGCa -3' miRNA: 3'- -CGCUGAGcg--GGUG-GUGCGGGUCGUGg -5' |
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14631 | 5' | -60.3 | NC_003521.1 | + | 73658 | 0.72 | 0.499641 |
Target: 5'- cGCGGC-CGCCU-CCaagACGCCCgaGGCGCCc -3' miRNA: 3'- -CGCUGaGCGGGuGG---UGCGGG--UCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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