miRNA display CGI


Results 81 - 100 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 206368 0.72 0.508701
Target:  5'- uGCGGCgaCGaCCC-CCAgGCCCgcAGCGCCu -3'
miRNA:   3'- -CGCUGa-GC-GGGuGGUgCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 211963 0.72 0.51783
Target:  5'- gGCGACUCGaCCgUGCCGCGCCgCcGCAgCu -3'
miRNA:   3'- -CGCUGAGC-GG-GUGGUGCGG-GuCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 29155 0.72 0.527023
Target:  5'- cGCGGCaacuUC-UCCGCCAaagGCCCGGUACCg -3'
miRNA:   3'- -CGCUG----AGcGGGUGGUg--CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 167050 0.72 0.536276
Target:  5'- aGCGGCguggCGCUCAUgACG-CCGGUGCCg -3'
miRNA:   3'- -CGCUGa---GCGGGUGgUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 14746 0.71 0.545586
Target:  5'- cGUGACggGCCgGCCGCGgCCGgggcGCGCCu -3'
miRNA:   3'- -CGCUGagCGGgUGGUGCgGGU----CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 137758 0.71 0.572856
Target:  5'- aGCc-CUCGCCCGCgCAccCGCCCugucugcAGCACCu -3'
miRNA:   3'- -CGcuGAGCGGGUG-GU--GCGGG-------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 102772 0.71 0.573803
Target:  5'- cGCGGCggUCGCgggcgaC-CCACGCCCcguGCGCCg -3'
miRNA:   3'- -CGCUG--AGCGg-----GuGGUGCGGGu--CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 123229 0.74 0.421738
Target:  5'- gGCGGCgguagguggUCGUagCGCCGCGCCCAGUagacGCCg -3'
miRNA:   3'- -CGCUG---------AGCGg-GUGGUGCGGGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 96742 0.74 0.397434
Target:  5'- -aGGCagaaGCCCAgCACguuGCCCAGCGCCg -3'
miRNA:   3'- cgCUGag--CGGGUgGUG---CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 173932 0.75 0.378649
Target:  5'- -gGACUCGCCCuugggcgucaccaACugcucggugccgaaCACGUCCAGCACCu -3'
miRNA:   3'- cgCUGAGCGGG-------------UG--------------GUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 95390 0.71 0.592804
Target:  5'- aGC-ACagGUCCACCgagGCGCCCAGCAagcCCg -3'
miRNA:   3'- -CGcUGagCGGGUGG---UGCGGGUCGU---GG- -5'
14631 5' -60.3 NC_003521.1 + 119966 0.7 0.602345
Target:  5'- cGCGGC-CGCCUcaagGCCGaGUCCAGCAUg -3'
miRNA:   3'- -CGCUGaGCGGG----UGGUgCGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 29684 0.7 0.610949
Target:  5'- gGCGACUgGaggaugaUCCGCUGCGUCCucGGCGCCu -3'
miRNA:   3'- -CGCUGAgC-------GGGUGGUGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 149619 0.7 0.611905
Target:  5'- cCGuACUgUGCCCACgaCGCGCCCgcGGUACCg -3'
miRNA:   3'- cGC-UGA-GCGGGUG--GUGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 111255 0.7 0.620521
Target:  5'- cGCGGCggagcagccaucgUCggGCCCGCCGUG-CCAGCGCCg -3'
miRNA:   3'- -CGCUG-------------AG--CGGGUGGUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129607 0.79 0.226896
Target:  5'- cCGugUCGCCCacuuuccggcGCCAuCGCCCAGC-CCa -3'
miRNA:   3'- cGCugAGCGGG----------UGGU-GCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 203006 0.77 0.265092
Target:  5'- gGCGGCUCGCCCGCCAagacggGUUCGGCggugauaGCCg -3'
miRNA:   3'- -CGCUGAGCGGGUGGUg-----CGGGUCG-------UGG- -5'
14631 5' -60.3 NC_003521.1 + 73964 0.77 0.283883
Target:  5'- aCGACcugCGCCCGCCGCGCCac-CGCCu -3'
miRNA:   3'- cGCUGa--GCGGGUGGUGCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206413 0.76 0.330148
Target:  5'- cGCGACgcccagcugaUC-CUCACCugGCCCgAGCGCCa -3'
miRNA:   3'- -CGCUG----------AGcGGGUGGugCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 27702 0.75 0.366462
Target:  5'- uGCGGC-CGCaccaCGCCACaCCCAGCGCg -3'
miRNA:   3'- -CGCUGaGCGg---GUGGUGcGGGUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.