miRNA display CGI


Results 101 - 120 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 11532 0.7 0.611905
Target:  5'- uCGACaugCGCCaguccuauCGCUACGCCUccGGCGCCg -3'
miRNA:   3'- cGCUGa--GCGG--------GUGGUGCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 170589 0.7 0.621479
Target:  5'- --aGCUCGCCCugCcuaGCCCuGCugCg -3'
miRNA:   3'- cgcUGAGCGGGugGug-CGGGuCGugG- -5'
14631 5' -60.3 NC_003521.1 + 61605 0.7 0.63106
Target:  5'- cGCGGCggGaCCaacaagagaACCACGUUCAGCGCCu -3'
miRNA:   3'- -CGCUGagC-GGg--------UGGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 132709 0.7 0.640641
Target:  5'- cGUGACcguaGCCC-CCAUGCCCAaguccccaaGCGCUa -3'
miRNA:   3'- -CGCUGag--CGGGuGGUGCGGGU---------CGUGG- -5'
14631 5' -60.3 NC_003521.1 + 22457 0.7 0.644473
Target:  5'- cGCGGCaCGCCUggcucacgguggccuGCCugGUgaugaacaCCGGCACCa -3'
miRNA:   3'- -CGCUGaGCGGG---------------UGGugCG--------GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 167050 0.72 0.536276
Target:  5'- aGCGGCguggCGCUCAUgACG-CCGGUGCCg -3'
miRNA:   3'- -CGCUGa---GCGGGUGgUGCgGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 29155 0.72 0.527023
Target:  5'- cGCGGCaacuUC-UCCGCCAaagGCCCGGUACCg -3'
miRNA:   3'- -CGCUG----AGcGGGUGGUg--CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 129607 0.79 0.226896
Target:  5'- cCGugUCGCCCacuuuccggcGCCAuCGCCCAGC-CCa -3'
miRNA:   3'- cGCugAGCGGG----------UGGU-GCGGGUCGuGG- -5'
14631 5' -60.3 NC_003521.1 + 203006 0.77 0.265092
Target:  5'- gGCGGCUCGCCCGCCAagacggGUUCGGCggugauaGCCg -3'
miRNA:   3'- -CGCUGAGCGGGUGGUg-----CGGGUCG-------UGG- -5'
14631 5' -60.3 NC_003521.1 + 73964 0.77 0.283883
Target:  5'- aCGACcugCGCCCGCCGCGCCac-CGCCu -3'
miRNA:   3'- cGCUGa--GCGGGUGGUGCGGgucGUGG- -5'
14631 5' -60.3 NC_003521.1 + 206413 0.76 0.330148
Target:  5'- cGCGACgcccagcugaUC-CUCACCugGCCCgAGCGCCa -3'
miRNA:   3'- -CGCUG----------AGcGGGUGGugCGGG-UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 27702 0.75 0.366462
Target:  5'- uGCGGC-CGCaccaCGCCACaCCCAGCGCg -3'
miRNA:   3'- -CGCUGaGCGg---GUGGUGcGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 173932 0.75 0.378649
Target:  5'- -gGACUCGCCCuugggcgucaccaACugcucggugccgaaCACGUCCAGCACCu -3'
miRNA:   3'- cgCUGAGCGGG-------------UG--------------GUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 96742 0.74 0.397434
Target:  5'- -aGGCagaaGCCCAgCACguuGCCCAGCGCCg -3'
miRNA:   3'- cgCUGag--CGGGUgGUG---CGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 123229 0.74 0.421738
Target:  5'- gGCGGCgguagguggUCGUagCGCCGCGCCCAGUagacGCCg -3'
miRNA:   3'- -CGCUG---------AGCGg-GUGGUGCGGGUCG----UGG- -5'
14631 5' -60.3 NC_003521.1 + 126917 0.73 0.464159
Target:  5'- cUGGCUCGCUCGCgaACGCCCuuuauGCugCg -3'
miRNA:   3'- cGCUGAGCGGGUGg-UGCGGGu----CGugG- -5'
14631 5' -60.3 NC_003521.1 + 174835 0.73 0.472909
Target:  5'- aGCGACUuggUGUCCggcgugGCCACGUCCAGCcauuCCa -3'
miRNA:   3'- -CGCUGA---GCGGG------UGGUGCGGGUCGu---GG- -5'
14631 5' -60.3 NC_003521.1 + 26937 0.72 0.496037
Target:  5'- cGCGACUCGCCuucuccuCACUcuugggugccauggACGCCCuGCAgCg -3'
miRNA:   3'- -CGCUGAGCGG-------GUGG--------------UGCGGGuCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 206368 0.72 0.508701
Target:  5'- uGCGGCgaCGaCCC-CCAgGCCCgcAGCGCCu -3'
miRNA:   3'- -CGCUGa-GC-GGGuGGUgCGGG--UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 211963 0.72 0.51783
Target:  5'- gGCGACUCGaCCgUGCCGCGCCgCcGCAgCu -3'
miRNA:   3'- -CGCUGAGC-GG-GUGGUGCGG-GuCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.