miRNA display CGI


Results 121 - 140 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14631 5' -60.3 NC_003521.1 + 121897 0.75 0.366462
Target:  5'- cGgGACgcCGCCgC-CCACGCCgCGGCGCCg -3'
miRNA:   3'- -CgCUGa-GCGG-GuGGUGCGG-GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 134276 0.75 0.381738
Target:  5'- cGCGAC-CgGCCCACuCGCGCUuuCAGCGCUu -3'
miRNA:   3'- -CGCUGaG-CGGGUG-GUGCGG--GUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 109759 0.7 0.63106
Target:  5'- cGCGG-UCGCcgCCACCGCGUCCgaGGCccGCCg -3'
miRNA:   3'- -CGCUgAGCG--GGUGGUGCGGG--UCG--UGG- -5'
14631 5' -60.3 NC_003521.1 + 91522 0.7 0.621479
Target:  5'- gGCGGC-CGCgUCGUCGCGCuCCAGCACg -3'
miRNA:   3'- -CGCUGaGCG-GGUGGUGCG-GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 114034 0.7 0.611905
Target:  5'- cGCGGa--GCUgGaCCACGCgCAGCGCCa -3'
miRNA:   3'- -CGCUgagCGGgU-GGUGCGgGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 181467 0.73 0.467649
Target:  5'- aGCGGCUgGCgCGCCGCcugcagcguggcgugGCUCAGCACg -3'
miRNA:   3'- -CGCUGAgCGgGUGGUG---------------CGGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 39275 0.73 0.481742
Target:  5'- cCGAUacaGCCgCGCCACGUcgCCGGCGCCg -3'
miRNA:   3'- cGCUGag-CGG-GUGGUGCG--GGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 165997 0.72 0.499641
Target:  5'- cGCGGgaCGCCgu-CGCGCUCGGCGCCg -3'
miRNA:   3'- -CGCUgaGCGGgugGUGCGGGUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 96547 0.72 0.51783
Target:  5'- aGCGAgUCGCCgUGCU-CGCCCAGCAg- -3'
miRNA:   3'- -CGCUgAGCGG-GUGGuGCGGGUCGUgg -5'
14631 5' -60.3 NC_003521.1 + 111659 0.72 0.527023
Target:  5'- aGCGAgaagUCGCCCAUCACcauccccuucgaGCUgAGCGCCg -3'
miRNA:   3'- -CGCUg---AGCGGGUGGUG------------CGGgUCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 113812 0.72 0.536276
Target:  5'- gGCGGCgUCGUcgggcaCCGCCACGUCgGGCAgCg -3'
miRNA:   3'- -CGCUG-AGCG------GGUGGUGCGGgUCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 18907 0.72 0.536276
Target:  5'- cGCGGCa-GCCCcgaaggguggcGCCGCGCgCCGGCAauCCg -3'
miRNA:   3'- -CGCUGagCGGG-----------UGGUGCG-GGUCGU--GG- -5'
14631 5' -60.3 NC_003521.1 + 99958 0.71 0.554947
Target:  5'- gGCGGCggCGCCUcgGCCgagaccgcgaaGCGCuCCAGCACg -3'
miRNA:   3'- -CGCUGa-GCGGG--UGG-----------UGCG-GGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 137758 0.71 0.572856
Target:  5'- aGCc-CUCGCCCGCgCAccCGCCCugucugcAGCACCu -3'
miRNA:   3'- -CGcuGAGCGGGUG-GU--GCGGG-------UCGUGG- -5'
14631 5' -60.3 NC_003521.1 + 123811 0.71 0.573803
Target:  5'- aCGACUCGCgcuCCGUCACGCcgaCCAGCugCu -3'
miRNA:   3'- cGCUGAGCG---GGUGGUGCG---GGUCGugG- -5'
14631 5' -60.3 NC_003521.1 + 170724 0.71 0.573803
Target:  5'- gGCGGCaCGCCgGCCAggUGCCCuGCGgCa -3'
miRNA:   3'- -CGCUGaGCGGgUGGU--GCGGGuCGUgG- -5'
14631 5' -60.3 NC_003521.1 + 95221 0.71 0.587091
Target:  5'- uGCGACUgcagcagcgaggccaCGgCCGCCGCGUCguGcCGCCg -3'
miRNA:   3'- -CGCUGA---------------GCgGGUGGUGCGGguC-GUGG- -5'
14631 5' -60.3 NC_003521.1 + 82854 0.71 0.592804
Target:  5'- gGCGGCgUCGCUaccagCGCCGucguCGCCCAGCcucagGCCa -3'
miRNA:   3'- -CGCUG-AGCGG-----GUGGU----GCGGGUCG-----UGG- -5'
14631 5' -60.3 NC_003521.1 + 209090 0.7 0.602345
Target:  5'- gGCGGCggaggcggUGgCCGCgGCGuCCCAGCACg -3'
miRNA:   3'- -CGCUGa-------GCgGGUGgUGC-GGGUCGUGg -5'
14631 5' -60.3 NC_003521.1 + 16214 0.7 0.611905
Target:  5'- gGUGGCggCGCCCugccGCCugGCCgAGUGCg -3'
miRNA:   3'- -CGCUGa-GCGGG----UGGugCGGgUCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.